halophFGD

Basic Information

Locus ID: Ag1G01938

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the monovalent cation proton antiporter 1 (CPA1) transporter (TC 2.A.36) family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	198064063	198071700	-	Ag1G01938

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.26	59,604.98 Da	42.46	110.44	0.54

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00999	Sodium/hydrogen exchanger family	30	443	4.3E-59	IPR006153
Gene3D	G3DSA:6.10.140.1330	-	147	198	9.8E-15	-
TIGRFAM	TIGR00840	b_cpa1: sodium/hydrogen exchanger 3	25	447	3.8E-77	IPR004709
PRINTS	PR01084	Na+/H+ exchanger signature	154	164	3.0E-11	IPR004709
PRINTS	PR01084	Na+/H+ exchanger signature	85	96	3.0E-11	IPR004709
PRINTS	PR01084	Na+/H+ exchanger signature	99	113	3.0E-11	IPR004709
PRINTS	PR01084	Na+/H+ exchanger signature	114	122	3.0E-11	IPR004709

Gene Ontology

Biological Process:

GO:0006812 (monoatomic cation transport) GO:0006814 (sodium ion transport) GO:0006885 (regulation of pH) GO:0055085 (transmembrane transport)

Molecular Function:

GO:0015385 (sodium:proton antiporter activity)

Cellular Component:

GO:0016020 (membrane)

KEGG Pathway

KO Term:

K14724 (solute carrier family 9 (sodium/hydrogen exchanger), member 8)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G05030.1	sodium hydrogen exchanger 2. member of Sodium proton exchanger family
RefSeq	XP_017256219.1	PREDICTED: sodium/hydrogen exchanger 2-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9SXJ8	Sodium/hydrogen exchanger 1 OS=Oryza sativa subsp. japonica OX=39947 GN=NHX1 PE=2 SV=1
TrEMBL	A0A096XPN3	Sodium/hydrogen exchanger OS=Glehnia littoralis OX=48119 PE=2 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	25.951342	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	20.736315	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	37.03521	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	33.25288	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	33.872028	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	44.233868	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	37.992752	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	29.115625	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	21.975054	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	21.875072	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	22.712162	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	20.033884	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	24.316967	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	20.755514	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	24.220556	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	27.539555	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	25.579643	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	36.618851	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	33.251213	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	26.657293	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	36.807671	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	24.031506	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	20.026848	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	21.611849	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	21.324165	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	38.698025	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	30.749319	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	34.107487	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	38.790234	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	14.85648		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	15.969195		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	12.028034		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	54.289948		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	23.897541		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	60.815796		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	24.207706		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	14.285909		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	19.095448		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	12.263844	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	24.523233	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	20.939178	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	39.20628	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	46.19891	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	44.001175	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	49.977467	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	39.98127	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	52.667446	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	16.754234	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	17.171385	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	14.667024	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg11218, jg12472, jg21574, jg27983, jg5693
Aizoaceae	Mesembryanthemum crystallinum	4	gene_10498, gene_12023, gene_12167, gene_18666
Amaranthaceae	Atriplex hortensis	3	Ah005859, Ah005983, Ah008986
Amaranthaceae	Beta vulgaris	3	BVRB_1g006450, BVRB_4g083400, BVRB_4g089680
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg14066, Sbi_jg16897, Sbi_jg16988, Sbi_jg18391 ... Sbi_jg36792, Sbi_jg61427, Sbi_jg61523
Amaranthaceae	Salicornia europaea	4	Seu_jg186, Seu_jg255, Seu_jg4716, Seu_jg9970
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00008268, GOSA_00008322, GOSA_00017395
Amaranthaceae	Suaeda glauca	6	Sgl23496, Sgl24650, Sgl24751, Sgl28626, Sgl29801, Sgl29899
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000008897, gene:ENSEOMG00000009003 ... gene:ENSEOMG00000026764, gene:ENSEOMG00000028716, gene:ENSEOMG00000031244, gene:ENSEOMG00000040431, gene:ENSEOMG00000043124, gene:ENSEOMG00000043243, gene:ENSEOMG00000044309
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.2BG0001800, CQ.Regalona.r1.4AG0009030 ... CQ.Regalona.r1.4AG0009710, CQ.Regalona.r1.4BG0009140, CQ.Regalona.r1.4BG0009930, CQ.Regalona.r1.4BG0025270
Anacardiaceae	Pistacia vera	6	pistato.v30086820, pistato.v30092940, pistato.v30153610 ... pistato.v30155670, pistato.v30155730, pistato.v30238440
Apiaceae	Apium graveolens	7	Ag1G01938, Ag4G02419, Ag5G01034, Ag5G02445, Ag8G01685 ... Ag9G01831, AgUnG01644
Arecaceae	Cocos nucifera	4	COCNU_01G002460, COCNU_01G012330, COCNU_04G009080 ... COCNU_12G001820
Arecaceae	Phoenix dactylifera	8	gene-LOC103700780, gene-LOC103713975, gene-LOC103714902 ... gene-LOC103719065, gene-LOC103723229, gene-LOC120104695, gene-LOC120104696, gene-LOC120104699
Asparagaceae	Asparagus officinalis	7	AsparagusV1_01.3301.V1.1, AsparagusV1_05.111.V1.1 ... AsparagusV1_05.1267.V1.1, AsparagusV1_05.3040.V1.1, AsparagusV1_07.1497.V1.1, AsparagusV1_07.1585.V1.1, AsparagusV1_09.556.V1.1
Asteraceae	Flaveria trinervia	8	Ftri10G21329, Ftri13G19678, Ftri14G13603, Ftri14G16062 ... Ftri15G06685, Ftri3G24215, Ftri7G07082, FtriNA09558
Brassicaceae	Arabidopsis thaliana	4	AT3G05030.1, AT3G06370.1, AT5G27150.1, AT5G55470.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10003949m.g.v1.0, Thhalv10015629m.g.v1.0 ... Thhalv10020432m.g.v1.0, Thhalv10020600m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp2g20430.v2.2, Sp3g03860.v2.2, Sp3g05280.v2.2 ... Sp6g17350.v2.2
Brassicaceae	Brassica nigra	6	BniB01g057310.2N, BniB01g058510.2N, BniB02g034130.2N ... BniB02g079310.2N, BniB04g004990.2N, BniB07g038240.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq01G1399, Ceq06G1254, Ceq06G1615, Ceq06G2321, Ceq09G1218
Casuarinaceae	Casuarina glauca	5	Cgl01G1571, Cgl06G1315, Cgl06G1676, Cgl06G2439, Cgl09G1309
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno02g01250, gene.Cymno03g13220, gene.Cymno04g05370 ... gene.Cymno05g04920
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g25450, gene.Thate02g28070, gene.Thate05g08460
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-12132, nbisL1-mrna-7795, nbisL1-mrna-9062 ... nbisL1-mrna-9646
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG03.2341, evm.TU.LG03.2381, evm.TU.LG04.270 ... evm.TU.LG05.1957, evm.TU.LG11.1366
Plantaginaceae	Plantago ovata	4	Pov_00003325, Pov_00008204, Pov_00022495, Pov_00026204
Plumbaginaceae	Limonium bicolor	7	Lb1G03373, Lb1G03381, Lb1G05118, Lb1G06888, Lb2G08825 ... Lb3G19655, Lb4G21611
Poaceae	Echinochloa crus-galli	11	AH03.3988, AH04.2084, AH05.978, AH06.1297, BH03.4314 ... BH04.2167, BH05.1022, BH06.1338, CH04.2490, CH06.1483, CH07.199
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_5AG0404940, gene-QOZ80_5BG0453090 ... gene-QOZ80_6AG0519020, gene-QOZ80_6BG0471130, gene-QOZ80_7AG0580630, gene-QOZ80_7BG0611800, gene-QOZ80_9AG0691220, gene-QOZ80_9BG0717490
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0021240.1, HORVU.MOREX.r3.2HG0115250.1 ... HORVU.MOREX.r3.4HG0364050.1, HORVU.MOREX.r3.7HG0675240.1
Poaceae	Lolium multiflorum	3	gene-QYE76_009424, gene-QYE76_029574, gene-QYE76_038972
Poaceae	Oryza coarctata	6	Oco09G002310, Oco11G008200, Oco12G008220, Oco13G015150 ... Oco14G015980, Oco22G010390
Poaceae	Oryza sativa	5	LOC_Os01g01570.1, LOC_Os05g05590.1, LOC_Os06g21360.1 ... LOC_Os07g47100.2, LOC_Os11g42790.1
Poaceae	Paspalum vaginatum	4	gene-BS78_02G382000, gene-BS78_05G227800 ... gene-BS78_09G043800, gene-BS78_10G131800
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0103381, Pt_Chr0404302, Pt_Chr0404319, Pt_Chr0502138 ... Pt_Chr0700124
Poaceae	Sporobolus alterniflorus	11	Chr01G012380, Chr0G021090, Chr0G021470, Chr10G001690 ... Chr12G024290, Chr16G004250, Chr17G003830, Chr18G001110, Chr19G000700, Chr24G013030, Chr27G016780
Poaceae	Thinopyrum elongatum	4	Tel1E01G181800, Tel2E01G255700, Tel4E01G274500 ... Tel7E01G410100
Poaceae	Triticum dicoccoides	8	gene_TRIDC1AG015850, gene_TRIDC1BG016220 ... gene_TRIDC2AG014730, gene_TRIDC2BG017770, gene_TRIDC4AG021830, gene_TRIDC4BG019620, gene_TRIDC7AG029250, gene_TRIDC7BG019830
Poaceae	Triticum aestivum	12	TraesCS1A02G102300.1, TraesCS1B02G112700.1 ... TraesCS1D02G093900.1, TraesCS2A02G121000.1, TraesCS2B02G141900.1, TraesCS2D02G123000.1, TraesCS4A02G145300.1, TraesCS4B02G125700.1, TraesCS4D02G147600.1, TraesCS7A02G228400.1, TraesCS7B02G191300.1, TraesCS7D02G226200.1
Poaceae	Zea mays	4	Zm00001eb165870_P001, Zm00001eb330030_P001 ... Zm00001eb381570_P001, Zm00001eb418020_P001
Poaceae	Zoysia japonica	6	nbis-gene-156, nbis-gene-18192, nbis-gene-33194 ... nbis-gene-46042, nbis-gene-52853, nbis-gene-58256
Poaceae	Zoysia macrostachya	6	Zma_g19103, Zma_g26423, Zma_g27698, Zma_g31823, Zma_g5737 ... Zma_g7028
Portulacaceae	Portulaca oleracea	12	evm.TU.Contig10.1, evm.TU.LG02.547, evm.TU.LG03.2012 ... evm.TU.LG08.558, evm.TU.LG08.600, evm.TU.LG14.313, evm.TU.LG18.1168, evm.TU.LG18.1206, evm.TU.LG20.681, evm.TU.LG20.708, evm.TU.LG22.1342, evm.TU.LG22.1382
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g10440, gene.Posoc02g32330
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_1_RagTag.233, evm.TU.Scaffold_2_RagTag.1994 ... evm.TU.Scaffold_2_RagTag.2023, evm.TU.Scaffold_6_RagTag.644, evm.TU.Scaffold_8_RagTag.1608, evm.TU.Scaffold_9_RagTag.851
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-16043, nbisL1-mrna-21367, nbisL1-mrna-3402 ... nbisL1-mrna-3444, nbisL1-mrna-7986, nbisL1-mrna-8726
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-14936, nbisL1-mrna-20834, nbisL1-mrna-29 ... nbisL1-mrna-3019, nbisL1-mrna-408, nbisL1-mrna-6
Rhizophoraceae	Ceriops zippeliana	6	nbisL1-mrna-13716, nbisL1-mrna-13740, nbisL1-mrna-15084 ... nbisL1-mrna-18450, nbisL1-mrna-5285, nbisL1-mrna-536
Rhizophoraceae	Kandelia candel	6	evm.TU.utg000003l.559, evm.TU.utg000009l.82 ... evm.TU.utg000009l.97, evm.TU.utg000011l.383, evm.TU.utg000012l.157, evm.TU.utg000018l.55
Rhizophoraceae	Kandelia obovata	6	Maker00002937, Maker00004942, Maker00005461, Maker00007673 ... Maker00009576, Maker00011242
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-12941, nbisL1-mrna-12955, nbisL1-mrna-13693 ... nbisL1-mrna-1542, nbisL1-mrna-7802, nbisL1-mrna-9398
Rhizophoraceae	Rhizophora mangle	6	nbisL1-mrna-16191, nbisL1-mrna-16210, nbisL1-mrna-209 ... nbisL1-mrna-22667, nbisL1-mrna-3595, nbisL1-mrna-5200
Salicaceae	Populus euphratica	7	populus_peu13493, populus_peu15789, populus_peu15829 ... populus_peu21999, populus_peu22000, populus_peu27205, populus_peu37112
Solanaceae	Lycium barbarum	5	gene-LOC132605613, gene-LOC132610264, gene-LOC132626858 ... gene-LOC132628009, gene-LOC132645213
Solanaceae	Solanum chilense	3	SOLCI003128100, SOLCI003295700, SOLCI006485500
Solanaceae	Solanum pennellii	4	gene-LOC107001818, gene-LOC107007925, gene-LOC107008369 ... gene-LOC107022034
Tamaricaceae	Reaumuria soongarica	5	STRG.32021_chr09_-, gene_12016, gene_13002, gene_16922 ... gene_8496
Tamaricaceae	Tamarix chinensis	5	TC05G2353, TC05G2407, TC06G0788, TC06G0809, TC12G1558
Zosteraceae	Zostera marina	3	Zosma01g13710.v3.1, Zosma01g20200.v3.1, Zosma06g16580.v3.1