Basic Information
Locus ID:
Ag1G01921
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Adaptor complexes medium subunit family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 197696349 | 197702997 | - | Ag1G01921 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 68,464.82 Da | 44.76 | 88.17 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09256 | AP_MuD_MHD | 301 | 619 | 6.2006E-118 | - |
| Pfam | PF00928 | Adaptor complexes medium subunit family | 302 | 587 | 4.3E-34 | IPR028565 |
| SUPERFAMILY | SSF49447 | Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor | 301 | 612 | 2.62E-36 | IPR036168 |
| Gene3D | G3DSA:2.60.40.1170 | Mu homology domain, subdomain B | 410 | 487 | 4.6E-18 | - |
| Gene3D | G3DSA:2.60.40.1170 | Mu homology domain, subdomain B | 311 | 409 | 4.6E-18 | - |
| ProSiteProfiles | PS51072 | Mu homology domain (MHD) profile. | 311 | 574 | 15.988573 | IPR028565 |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G20790.1 | clathrin adaptor complexes medium subunit family protein. | 0 |
| RefSeq | XP_017226896.1 | PREDICTED: AP-5 complex subunit mu [Daucus carota subsp. sativus] | 0 |
| Q8W0Z6 | AP-5 complex subunit mu OS=Arabidopsis thaliana OX=3702 GN=AP5M PE=2 SV=1 | 0 | |
| TrEMBL | A0A175YIN0 | MHD domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030580 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 6.56115 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.406951 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.40026 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.639174 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.03359 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.407468 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.743681 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.614977 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 14.796979 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 14.546216 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 14.660888 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 14.332528 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 12.340341 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 11.132226 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.413169 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.184934 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.869851 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.060368 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.57978 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.158078 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.633081 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.240353 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.329119 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.865131 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.766754 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 6.76477 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 6.296374 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.926017 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.078936 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.748756 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.793708 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.453399 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.13112 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.777666 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.944346 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.173857 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.923656 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.604662 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 7.467681 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.251586 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.02899 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.62198 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.811052 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.426861 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.63658 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.777644 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.862188 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 9.133018 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.898672 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.429325 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12492 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10811 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014763 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g198430 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25166, Sbi_jg9009 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19582 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007635 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42443, Sgl47172 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000008827, gene:ENSEOMG00000010996 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0018380, CQ.Regalona.r1.8BG0023990 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30238010, pistato.v30238020 |
| Apiaceae | Apium graveolens | 1 | Ag1G01921 |
| Arecaceae | Cocos nucifera | 1 | COCNU_12G004270 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709908 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.3227.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G04359 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G20790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003762m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g27240.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g008200.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1265 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1353 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g05560 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g17010 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1412 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026245 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00113 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.3627, BH05.3648, CH05.3827 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0392480, gene-QOZ80_5BG0440810 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0447110.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_017812 |
| Poaceae | Oryza coarctata | 1 | Oco24G007200 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g34370.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G084500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0703697, Pt_Chr0703700 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G016200, Chr06G016900, Chr19G009910, Chr27G006520 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G191000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG014460, gene_TRIDC5BG017260 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G099300.2, TraesCS5B02G104600.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb410820_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30225 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25907 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2715, evm.TU.LG23.926 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g12070 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.671 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16011 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4120 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-563 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.405 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007513 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15369 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3411 |
| Salicaceae | Populus euphratica | 1 | populus_peu22014 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645027 |
| Solanaceae | Solanum chilense | 1 | SOLCI003038500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008293 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9381 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1504 |
| Zosteraceae | Zostera marina | 1 | Zosma02g24600.v3.1 |