Basic Information
Locus ID:
Ag1G01919
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Leucine-rich repeat - CC (cysteine-containing) subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 197665610 | 197684188 | + | Ag1G01919 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.00 | 65,685.22 Da | 35.45 | 107.52 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 184 | 207 | 0.035 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 443 | 465 | 0.45 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 469 | 491 | 5.1E-4 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 520 | 542 | 0.58 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 159 | 179 | 0.11 | IPR001611 |
| Pfam | PF18511 | F-box | 12 | 48 | 1.3E-6 | IPR041567 |
| SUPERFAMILY | SSF81383 | F-box domain | 10 | 45 | 6.02E-7 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 263 | 577 | 9.22E-45 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 120 | 280 | 3.06E-20 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 507 | 602 | 1.3E-13 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 245 | 325 | 8.4E-11 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 326 | 506 | 5.0E-43 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 5 | 244 | 1.7E-36 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 313 | 338 | 2.8E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 494 | 519 | 1.8 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 443 | 468 | 0.0015 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 287 | 312 | 0.0022 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 365 | 390 | 0.041 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 211 | 236 | 22.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 417 | 442 | 0.0068 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 184 | 209 | 3.0E-6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 159 | 183 | 6.9 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 339 | 364 | 12.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 262 | 286 | 23.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 520 | 545 | 3.9E-6 | IPR006553 |
| SMART | SM00256 | fbox_2 | 11 | 52 | 0.0013 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 469 | 493 | 0.19 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 391 | 416 | 0.0012 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 133 | 158 | 5.9 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 546 | 571 | 23.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15475.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_017226795.1 | PREDICTED: F-box/LRR-repeat protein 4 [Daucus carota subsp. sativus] | 0 |
| Q9C5D2 | F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana OX=3702 GN=FBL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A175YHL7 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030582 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 14.538888 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.756471 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 13.046489 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 13.123425 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.671212 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 16.163532 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 15.176459 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 17.951969 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 20.72324 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 22.883839 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 21.191568 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 24.350044 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 19.809517 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 18.303602 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 10.728875 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 8.873547 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.841046 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 12.545008 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 10.483358 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 13.118658 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 12.213975 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 17.340427 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 15.175058 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 15.80401 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 15.150936 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 15.303968 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 10.283609 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 12.094862 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 12.512793 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 6.468358 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 7.988693 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 7.941505 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 12.276692 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 14.024144 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 8.87144 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 11.450541 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.971001 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 8.807179 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 12.774155 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.847505 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.816547 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 20.725582 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 23.711857 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 13.965566 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 14.387057 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 17.651621 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 16.860111 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 16.723503 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 17.296476 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 14.903492 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12493 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4170 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30237970, pistato.v30238000 |
| Apiaceae | Apium graveolens | 1 | Ag1G01919 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G007540 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723004 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1400.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G22647 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G15475.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024700m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g13700.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g073970.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1354 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g00110 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g00400 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1413 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00026246, Pov_00026249, Pov_00034018 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00114 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.2463, BH04.2128, CH02.1614, CH03.2032, CH04.2458 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0690790, gene-QOZ80_9BG0717100 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0365590.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_065994 |
| Poaceae | Oryza coarctata | 2 | Oco21G008990, Oco22G010240 |
| Poaceae | Oryza sativa | 3 | LOC_Os08g30980.1, LOC_Os10g05800.2, LOC_Os11g42160.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G225300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0103366 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G014250, Chr31G008270 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G244800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG020800, gene_TRIDC4BG024690 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G142500.3, TraesCS4D02G148000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb115300_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-37587, nbis-gene-37589, nbis-gene-58391 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18228, Zma_g18230 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2060, evm.TU.LG14.358 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g34700 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.507 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1455 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17342 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6229 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.912 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012570 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6308 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2065 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132642061 |
| Solanaceae | Solanum chilense | 1 | SOLCI001496100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021070 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9380 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1503 |
| Zosteraceae | Zostera marina | 1 | Zosma04g26890.v3.1 |