halophFGD

Basic Information

Locus ID: Ag1G01906

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: DNAJ heat shock N-terminal domain-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	197405106	197407751	+	Ag1G01906

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.87	48,780.06 Da	55.20	54.23	-1.00

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd06257	DnaJ	66	119	1.48328E-17	IPR001623
Pfam	PF00226	DnaJ domain	66	127	3.2E-20	IPR001623
SUPERFAMILY	SSF46565	Chaperone J-domain	48	126	2.75E-21	IPR036869
Gene3D	G3DSA:1.10.287.110	DnaJ domain	63	164	5.5E-22	IPR036869
SMART	SM00271	dnaj_3	65	122	9.2E-21	IPR001623
ProSiteProfiles	PS50076	dnaJ domain profile.	66	130	17.025419	IPR001623
ProSitePatterns	PS00636	Nt-dnaJ domain signature.	107	126	-	IPR018253
PRINTS	PR00625	DnaJ domain signature	68	86	3.1E-12	IPR001623
PRINTS	PR00625	DnaJ domain signature	122	141	3.1E-12	IPR001623
PRINTS	PR00625	DnaJ domain signature	86	101	3.1E-12	IPR001623
PRINTS	PR00625	DnaJ domain signature	102	122	3.1E-12	IPR001623
MobiDBLite	mobidb-lite	consensus disorder prediction	217	231	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	163	401	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	247	266	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	299	330	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	182	202	-	-

KEGG Pathway

KO Term:

K09518 (DnaJ homolog subfamily B member 12)

Pathway:

ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G37380.1	Chaperone DnaJ-domain superfamily protein.
RefSeq	XP_017224070.1	PREDICTED: J protein JJJ2-like [Daucus carota subsp. sativus]
Swiss-Prot	B3CVD9	Chaperone protein DnaJ OS=Orientia tsutsugamushi (strain Ikeda) OX=334380 GN=dnaJ PE=3 SV=1
TrEMBL	A0A175YHK7	J domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030594 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	3.445947	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	2.972142	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	2.382473	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	2.440862	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	2.664315	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	2.370932	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	2.925138	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.17873	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	5.250243	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	5.871972	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	7.366532	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	7.227352	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	5.193281	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	5.393629	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.050163	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	1.229607	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	1.867478	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	1.58973	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	1.754649	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.932803	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.965311	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	2.845852	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	2.732248	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	2.917716	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	3.565191	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	2.247821	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1.603607	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	1.606401	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	2.559855	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.371596		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	1.361104		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.003334		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.684724		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	2.380045		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.944803		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.724429		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.369732		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.65257		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	4.544254	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.83648	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.434725	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.896273	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.364256	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.988072	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	1.481435	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.83679	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	2.166923	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	5.311141	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	4.110611	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	5.427803	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg13901, jg2207, jg25610, jg33936, jg34504, jg9607
Aizoaceae	Mesembryanthemum crystallinum	3	gene_18008, gene_19826, gene_3280
Amaranthaceae	Atriplex hortensis	3	Ah001823, Ah013942, Ah018689
Amaranthaceae	Beta vulgaris	2	BVRB_3g052370, BVRB_6g150650
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg15124, Sbi_jg31748, Sbi_jg42640, Sbi_jg45256 ... Sbi_jg55958, Sbi_jg57550
Amaranthaceae	Salicornia europaea	3	Seu_jg25235, Seu_jg26436, Seu_jg26911
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00002659, GOSA_00020023, GOSA_00029287
Amaranthaceae	Suaeda glauca	8	Sgl01398, Sgl06473, Sgl06552, Sgl35472, Sgl40889, Sgl54149 ... Sgl54164, Sgl59468
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000000521, gene:ENSEOMG00000003444 ... gene:ENSEOMG00000004392, gene:ENSEOMG00000010166, gene:ENSEOMG00000021155, gene:ENSEOMG00000021933, gene:ENSEOMG00000025321, gene:ENSEOMG00000032605, gene:ENSEOMG00000044222
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.3AG0004560, CQ.Regalona.r1.3BG0004640 ... CQ.Regalona.r1.5AG0016960, CQ.Regalona.r1.5BG0018450, CQ.Regalona.r1.6AG0002880, CQ.Regalona.r1.6BG0002760
Anacardiaceae	Pistacia vera	2	pistato.v30184980, pistato.v30228750
Apiaceae	Apium graveolens	2	Ag1G01906, Ag3G02589
Arecaceae	Cocos nucifera	3	COCNU_02G009110, COCNU_02G014030, COCNU_15G005190
Arecaceae	Phoenix dactylifera	3	gene-LOC103697819, gene-LOC103713704, gene-LOC103715714
Asparagaceae	Asparagus officinalis	3	AsparagusV1_02.1173.V1.1, AsparagusV1_04.1482.V1.1 ... AsparagusV1_09.1389.V1.1
Asteraceae	Flaveria trinervia	5	Ftri16G19712, Ftri4G12678, Ftri5G18796, Ftri8G17085 ... Ftri8G31709
Brassicaceae	Arabidopsis thaliana	3	AT2G25560.1, AT5G37380.1, AT5G53150.1
Brassicaceae	Eutrema salsugineum	8	Thhalv10000086m.g.v1.0, Thhalv10000169m.g.v1.0 ... Thhalv10010173m.g.v1.0, Thhalv10012364m.g.v1.0, Thhalv10013529m.g.v1.0, Thhalv10027069m.g.v1.0, Thhalv10027481m.g.v1.0, Thhalv10027781m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp4g04940.v2.2, Sp6g15330.v2.2, Sp7g04960.v2.2 ... Sp7g18150.v2.2
Brassicaceae	Brassica nigra	5	BniB01g017850.2N, BniB02g023970.2N, BniB02g023980.2N ... BniB02g031310.2N, BniB07g018580.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq09G1569
Casuarinaceae	Casuarina glauca	3	Cgl01G2211, Cgl09G1664, Cgl09G1705
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno04g03030, gene.Cymno07g03690, gene.Cymno08g05780
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate02g07910, gene.Thate05g09860, gene.Thate06g08990 ... gene.Thate08g07710
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-11498, nbisL1-mrna-11735
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG03.789
Plantaginaceae	Plantago ovata	4	Pov_00010722, Pov_00035887, Pov_00041123, Pov_00041127
Plumbaginaceae	Limonium bicolor	2	Lb1G04220, Lb1G07835
Poaceae	Echinochloa crus-galli	4	AH09.839, BH09.829, CH07.1746, CH09.896
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_1AG0039170, gene-QOZ80_1AG0044840 ... gene-QOZ80_1BG0089190, gene-QOZ80_1BG0094850, gene-QOZ80_2AG0131840, gene-QOZ80_2BG0187270, gene-QOZ80_2BG0187280
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.2HG0162940.1.CDS1 ... HORVU.MOREX.r3.3HG0311380.1.CDS1, HORVU.MOREX.r3.3HG0330450.1.CDS1, HORVU.MOREX.r3.4HG0411040.1.CDS1
Poaceae	Lolium multiflorum	5	gene-QYE76_031840, gene-QYE76_043686, gene-QYE76_057459 ... gene-QYE76_057499, gene-QYE76_071272
Poaceae	Oryza coarctata	8	Oco02G029850, Oco03G010800, Oco04G011190, Oco05G015470 ... Oco06G015970, Oco07G004090, Oco08G004270, Oco11G009000
Poaceae	Oryza sativa	4	LOC_Os01g69930.1, LOC_Os02g30620.3, LOC_Os03g28310.1 ... LOC_Os04g31940.1
Poaceae	Paspalum vaginatum	4	gene-BS78_03G385800, gene-BS78_04G141600 ... gene-BS78_06G069400, gene-BS78_06G120200
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0303001, Pt_Chr0303017, Pt_Chr0600559
Poaceae	Sporobolus alterniflorus	12	Chr02G002290, Chr02G005250, Chr03G019640, Chr03G023050 ... Chr05G028130, Chr05G032180, Chr06G011270, Chr08G022460, Chr13G011930, Chr13G011940, Chr13G011950, Chr15G012870
Poaceae	Thinopyrum elongatum	4	Tel1E01G034700, Tel2E01G507900, Tel3E01G689800 ... Tel3E01G908000
Poaceae	Triticum dicoccoides	9	gene_TRIDC2AG041130, gene_TRIDC2BG044070 ... gene_TRIDC3AG061540, gene_TRIDC3AG075970, gene_TRIDC3BG069260, gene_TRIDC3BG087190, gene_TRIDC3BG087330, gene_TRIDC4BG053830, gene_TRIDC5AG070180
Poaceae	Triticum aestivum	11	TraesCS2A02G284200.2.cds1, TraesCS2B02G301100.1 ... TraesCS2D02G283100.2.cds1, TraesCS3A02G435100.1, TraesCS3A02G536400.1.cds1, TraesCS3B02G470100.1.cds1, TraesCS3B02G607500.1.cds1, TraesCS3D02G541800.1.cds1, TraesCS4B02G319100.1, TraesCS4D02G315600.1.cds1, TraesCS5A02G493100.1.cds1
Poaceae	Zea mays	7	Zm00001eb022320_P001, Zm00001eb085350_P001 ... Zm00001eb180900_P001, Zm00001eb364230_P001, Zm00001eb421150_P001, Zm00001eb423990_P001, Zm00001eb424000_P001
Poaceae	Zoysia japonica	3	nbis-gene-10959, nbis-gene-11478, nbis-gene-20920
Poaceae	Zoysia macrostachya	4	Zma_g11498, Zma_g13562, Zma_g13563, Zma_g9286
Portulacaceae	Portulaca oleracea	7	evm.TU.LG01.1513, evm.TU.LG02.219, evm.TU.LG02.220 ... evm.TU.LG03.1310, evm.TU.LG09.1459, evm.TU.LG12.357, evm.TU.LG14.777
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g03710, gene.Posoc05g13120
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_15_RagTag.876, evm.TU.Scaffold_4_RagTag.37
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-27066, nbisL1-mrna-27251, nbisL1-mrna-29299
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-11373, nbisL1-mrna-17820
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-15531, nbisL1-mrna-2234
Rhizophoraceae	Kandelia candel	2	add.evm.TU.utg000001l.247, add.evm.TU.utg000008l.4
Rhizophoraceae	Kandelia obovata	1	Maker00001288
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-17625, nbisL1-mrna-21171
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-17653, nbisL1-mrna-6353
Salicaceae	Populus euphratica	9	populus_peu03987, populus_peu03988, populus_peu28088 ... populus_peu28868, populus_peu29525, populus_peu29526, populus_peu30268, populus_peu34826, populus_peu37715
Solanaceae	Lycium barbarum	4	gene-LOC132626351, gene-LOC132632040, gene-LOC132632467 ... gene-LOC132632477
Solanaceae	Solanum chilense	5	SOLCI001735400, SOLCI001822500, SOLCI003525600 ... SOLCI004051400, SOLCI007400100
Solanaceae	Solanum pennellii	4	gene-LOC107008580, gene-LOC107014017, gene-LOC107014129 ... gene-LOC107015060
Tamaricaceae	Reaumuria soongarica	4	STRG.14070_chr05_+, STRG.5090_chr03_+, gene_10365 ... gene_15387
Tamaricaceae	Tamarix chinensis	3	TC01G3302, TC01G3303, TC08G2635
Zosteraceae	Zostera marina	3	Zosma02g24870.v3.1, Zosma04g17000.v3.1, Zosma05g09760.v3.1