halophFGD

Basic Information

Locus ID: Ag1G01896

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Carbohydrate-binding protein of the ER

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	197294729	197297727	+	Ag1G01896

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.30	63,409.57 Da	29.21	88.79	-0.22

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd14066	STKc_IRAK	78	353	5.33567E-97	-
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	78	351	6.9E-46	IPR001245
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	467	560	1.2E-11	IPR001245
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	445	562	1.66E-20	IPR011009
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	57	360	4.93E-77	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	436	550	1.0E-24	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	32	148	1.2E-32	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	149	369	1.8E-59	-
SMART	SM00220	serkin_6	72	356	9.5E-32	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	465	563	11.948191	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	72	356	36.894699	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	78	101	-	IPR017441
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	471	503	-	IPR017441
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	201	213	-	IPR008271

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G39000.1	Malectin/receptor-like protein kinase family protein.
RefSeq	XP_017256076.1	PREDICTED: probable receptor-like protein kinase At1g49730 isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q9FID8	Putative receptor-like protein kinase At5g39000 OS=Arabidopsis thaliana OX=3702 GN=At5g39000 PE=3 SV=1
TrEMBL	A0A251TJ13	Putative serine/threonine/dual specificity protein kinase, catalytic domain-containing protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr10g0295131 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.786898	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.598902	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.134815	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.387437	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.467935	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.278944	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.364581	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	7.448548	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	9.85947	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	9.756715	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	6.018067	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	7.680194	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	5.376984	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.980637	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	1.242906	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	5.861661	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	1.605421	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	14.102408	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	16.086657	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.230588	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.101206	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.506111	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.264351	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.328982	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.486363	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.092607		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.25412		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.413771		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	7.191732		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	3.592102		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	14.227348		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.847544		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.652624		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.469661		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	1.272417	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	7.978062	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	2.285301	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	12.586917	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	29.471888	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	4.369917	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	3.029927	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	7.418532	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	3.428984	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.167079	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.179078	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.383222	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	6	Ag1G01892, Ag1G01893, Ag1G01894, Ag1G01896, Ag1G01897 ... Ag9G01784
Asteraceae	Flaveria trinervia	8	Ftri6G13736, Ftri7G15621, Ftri8G01115, Ftri8G26217 ... Ftri9G00420, Ftri9G19246, Ftri9G22495, Ftri9G29358