halophFGD

Basic Information

Locus ID: Ag1G01894

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: LRR receptor-like serine threonine-protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	197186262	197206633	+	Ag1G01894

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.60	141,931.22 Da	37.82	88.48	-0.27

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00069	Protein kinase domain	77	352	6.6E-46	IPR000719
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	1108	1249	2.1E-9	IPR001245
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	590	685	4.5E-6	IPR001245
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	537	595	2.95E-7	IPR011009
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	595	703	3.47E-13	IPR011009
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	1042	1258	6.99E-21	IPR011009
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	52	353	9.85E-75	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	776	854	6.4E-7	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	32	151	1.2E-31	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	1036	1107	1.6E-6	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	576	704	2.7E-20	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	873	966	1.1E-9	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	152	374	2.2E-57	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	1108	1263	1.5E-20	-
SMART	SM00220	serkin_6	75	359	2.4E-30	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	75	359	37.926483	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	860	1252	16.372131	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	204	216	-	IPR008271
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	81	104	-	IPR017441
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	1060	1092	-	IPR017441
Coils	Coil	Coil	21	45	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G39000.1	Malectin/receptor-like protein kinase family protein.
RefSeq	XP_017256053.1	PREDICTED: uncharacterized protein LOC108225633 [Daucus carota subsp. sativus]
Swiss-Prot	Q9FID8	Putative receptor-like protein kinase At5g39000 OS=Arabidopsis thaliana OX=3702 GN=At5g39000 PE=3 SV=1
TrEMBL	A0A4S4DLK6	Protein kinase domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_011214 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	6.950608	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	6.478461	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	4.953105	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	6.403822	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	6.547555	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	4.829407	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	4.73528	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	2.404013	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	21.754667	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	20.670668	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	22.837337	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	17.166525	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	20.57926	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	16.410391	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	9.639286	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	8.963402	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	14.685331	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	17.2437	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	11.388717	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	17.328526	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	16.888479	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	15.094327	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	19.955233	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	15.798743	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	13.635226	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	24.042339	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	20.273722	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	19.816706	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	20.344849	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.504885		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	1.633852		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.309031		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	6.852632		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	4.049666		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	5.303239		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	4.377113		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.897363		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.362454		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	4.714067	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	6.516994	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	5.213761	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	10.474813	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	7.385249	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	13.02117	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	17.451345	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	6.756908	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	12.04662	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	9.069427	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	8.948139	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	7.582096	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	6	Ag1G01892, Ag1G01893, Ag1G01894, Ag1G01896, Ag1G01897 ... Ag9G01784
Asteraceae	Flaveria trinervia	8	Ftri6G13736, Ftri7G15621, Ftri8G01115, Ftri8G26217 ... Ftri9G00420, Ftri9G19246, Ftri9G22495, Ftri9G29358