halophFGD

Basic Information

Locus ID: Ag1G01893

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Cysteine-rich receptor-like protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	197146631	197151049	+	Ag1G01893

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.03	90,319.71 Da	42.09	91.83	-0.27

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd14066	STKc_IRAK	480	761	5.78519E-91	-
CDD	cd14066	STKc_IRAK	63	334	2.89776E-94	-
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	478	760	1.4E-40	IPR001245
Pfam	PF00069	Protein kinase domain	58	334	4.9E-47	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	455	760	3.42E-73	IPR011009
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	32	334	2.43E-75	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	560	770	1.1E-53	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	446	559	1.7E-28	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	18	133	2.5E-32	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	134	354	1.4E-57	-
SMART	SM00220	serkin_6	474	760	8.2E-22	IPR000719
SMART	SM00220	serkin_6	57	341	2.7E-33	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	474	766	36.060795	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	57	341	38.350502	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	63	87	-	IPR017441
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	609	621	-	IPR008271
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	480	512	-	IPR017441
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	186	198	-	IPR008271

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G51550.1	Malectin/receptor-like protein kinase family protein. Encodes a synergid-expressed, plasma-membrane localized receptor-like kinase that accumulates asymetrically in the synergid membrnane at the filiform apparatus and mediates male-female gametophyte interactions during pollen tube reception.
RefSeq	XP_017225597.1	PREDICTED: uncharacterized protein LOC108201812 isoform X2 [Daucus carota subsp. sativus]
Swiss-Prot	Q9SCZ4	Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana OX=3702 GN=FER PE=1 SV=1
TrEMBL	A0A8S0TYI0	Receptor kinase At5g39000 OS=Olea europaea subsp. europaea OX=158383 GN=OLEA9_A020836 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.885002	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.887914	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.44807	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.674389	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.358901	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.296687	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	2.026934	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.449487	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	29.178476	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	29.149597	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	18.990976	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	2.399824	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	19.456276	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	7.408881	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	20.722059	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	13.806804	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.609385	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	19.517441	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	17.445347	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	36.6021	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	17.480909	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	2.514946	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	3.401928	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	4.797593	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	17.369165	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	1.165038	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.156899	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.32659	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.050099	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	2.486708		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	1.396263		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	2.910691		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	7.742249		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	6.437318		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	11.921315		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	4.604428		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	6.992182		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	8.132998		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.398131	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.996402	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.251426	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	39.264263	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	80.607101	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	2.974915	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	1.785157	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	24.654425	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	4.288865	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	10.630628	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	5.708204	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	8.537962	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	6	Ag1G01892, Ag1G01893, Ag1G01894, Ag1G01896, Ag1G01897 ... Ag9G01784
Asteraceae	Flaveria trinervia	8	Ftri6G13736, Ftri7G15621, Ftri8G01115, Ftri8G26217 ... Ftri9G00420, Ftri9G19246, Ftri9G22495, Ftri9G29358