halophFGD

Basic Information

Locus ID: Ag1G01892

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: belongs to the protein kinase superfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	197139365	197144494	-	Ag1G01892

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.86	90,935.35 Da	35.44	90.96	-0.29

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd14066	STKc_IRAK	528	806	8.65569E-88	-
CDD	cd14066	STKc_IRAK	89	360	5.00329E-92	-
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	526	803	8.3E-46	IPR001245
Pfam	PF00069	Protein kinase domain	84	360	2.4E-47	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	62	361	6.74E-78	IPR011009
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	496	802	2.56E-78	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	160	379	6.2E-60	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	608	809	1.1E-58	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	481	607	6.6E-27	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	39	159	6.0E-33	-
SMART	SM00220	serkin_6	83	367	1.3E-31	IPR000719
SMART	SM00220	serkin_6	522	806	1.2E-39	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	522	806	39.212677	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	83	367	37.827545	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	528	560	-	IPR017441
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	89	112	-	IPR017441
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	212	224	-	IPR008271
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	652	664	-	IPR008271
Coils	Coil	Coil	15	49	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G28930.2	protein kinase 1B.
RefSeq	XP_017225595.1	PREDICTED: lysM domain receptor-like kinase 3 [Daucus carota subsp. sativus]
Swiss-Prot	P46573	Probable serine/threonine-protein kinase PBL10 OS=Arabidopsis thaliana OX=3702 GN=PBL10 PE=1 SV=2
TrEMBL	A0A834G9B8	Protein kinase domain-containing protein OS=Rhododendron simsii OX=118357 GN=RHSIM_Rhsim10G0054500 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	2.165458	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	2.964481	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.408657	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	2.264791	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.924338	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	2.705881	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.80386	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.587725	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	11.862671	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	9.846136	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	9.744631	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	2.609793	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	4.828787	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	3.674522	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	24.316292	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	24.073168	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	4.579724	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	19.830307	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	20.627922	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	36.241226	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	24.572639	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	3.709275	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	2.373026	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	5.148499	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	8.968122	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	6.039569	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	6.779189	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	8.563704	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	4.640688	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	2.473047		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	2.1872		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.829638		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	16.535765		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	6.641169		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	15.793921		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	11.083357		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	5.016918		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	6.527975		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	2.860513	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	5.278531	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	5.777309	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	25.751986	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	37.890961	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	19.263618	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	17.401989	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	27.431215	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	13.943606	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	3.756979	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	2.528795	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	3.274917	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	6	Ag1G01892, Ag1G01893, Ag1G01894, Ag1G01896, Ag1G01897 ... Ag9G01784
Asteraceae	Flaveria trinervia	8	Ftri6G13736, Ftri7G15621, Ftri8G01115, Ftri8G26217 ... Ftri9G00420, Ftri9G19246, Ftri9G22495, Ftri9G29358