Basic Information
Locus ID:
Ag1G01887
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Ubiquitin homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 197080314 | 197080679 | - | Ag1G01887 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 13,392.08 Da | 33.73 | 106.20 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 24 | 93 | 5.7E-11 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 17 | 93 | 9.46E-14 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 6 | 103 | 5.1E-13 | - |
| SMART | SM00213 | ubq_7 | 20 | 92 | 9.2E-9 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 20 | 92 | 13.097113 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017225410.1 | PREDICTED: polyubiquitin-like [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A175YH91 | Ubiquitin-like domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030615 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 7.586763 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.664831 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.327637 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.18684 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.658682 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.153636 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.388554 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.029164 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.105202 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.225209 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.29391 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19980 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7261 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah008759 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg18918 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5209 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006677 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23374, Sgl28490 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000028976, gene:ENSEOMG00000040656 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0022740, CQ.Regalona.r1.4BG0023990 |
| Apiaceae | Apium graveolens | 2 | Ag1G01886, Ag1G01887 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696301, gene-LOC103698757 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G24114 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT4G05230.1, AT4G05240.1, AT4G05250.1, AT4G05260.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10028963m.g.v1.0, Thhalv10029386m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g02990.v2.2, Sp6g03760.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB08g045620.2N, BniB08g046720.2N, BniB08g046740.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g07470 |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate01g08220, gene.Thate06g12760, gene.Thate06g12770 ... |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG12.559, evm.TU.LG12.562 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G07421 |
| Poaceae | Echinochloa crus-galli | 8 | AH05.3213, AH06.2720, BH04.2223, BH05.3252, BH06.2521 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3BG0286330, gene-QOZ80_6AG0548350 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0081280.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_047285, gene-QYE76_064734 |
| Poaceae | Oryza coarctata | 2 | Oco23G004810, Oco24G004320 |
| Poaceae | Oryza sativa | 2 | LOC_Os12g17820.1, LOC_Os12g17840.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G232900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0104158 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G020490, Chr06G021950, Chr10G020510, Chr11G002120 |
| Poaceae | Thinopyrum elongatum | 4 | Tel3E01G904500, Tel5E01G069800, Tel5E01G751200 ... |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC5AG004130, gene_TRIDC5AG004140 ... |
| Poaceae | Triticum aestivum | 12 | TraesCS3B02G611900.1.cds1, TraesCS5A02G027900.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb225210_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-9729 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g24970, Zma_g31011 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2917, evm.TU.LG09.385 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g05750 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.971 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23905 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9983 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21680 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000027l.26 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20973 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23250 |
| Salicaceae | Populus euphratica | 1 | populus_peu10253 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616154 |
| Solanaceae | Solanum chilense | 1 | SOLCI004990100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107003586, gene-LOC114074902 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17841 |
| Tamaricaceae | Tamarix chinensis | 4 | TC05G2975, TC05G2976, TC05G2978, TC05G2979 |
| Zosteraceae | Zostera marina | 1 | Zosma03g03320.v3.1 |