Basic Information
Locus ID:
Ag1G01883
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
mediator of RNA polymerase II transcription subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 197013656 | 197022446 | - | Ag1G01883 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.38 | 60,035.84 Da | 59.42 | 72.98 | -0.59 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G03070.1 | mediator subunit 8. Encodes a subunit of the Mediator complex. Regulates plant defense and flowering. | 0 |
| RefSeq | XP_017227449.1 | PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q4V3C1 | Mediator of RNA polymerase II transcription subunit 8 OS=Arabidopsis thaliana OX=3702 GN=MED8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J5BCF6 | Mediator of RNA polymerase II transcription subunit 8 OS=Nyssa sinensis OX=561372 GN=F0562_024271 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 45.098263 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 25.573078 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 23.683058 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 22.231575 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 23.770554 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 19.555819 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 19.645267 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 16.289394 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 31.364643 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 31.50926 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 34.252277 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 31.639122 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 31.247101 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 28.714975 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 14.40563 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 17.352896 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 16.931873 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.902935 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 17.202114 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 14.556277 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 18.309225 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 18.634228 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 17.135017 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 23.197231 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 17.106083 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 19.489166 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 15.8886 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 16.920578 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 18.534637 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.463098 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 11.319443 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.287191 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.998486 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 12.506526 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 8.442981 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 8.910642 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.040827 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.616648 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 17.653625 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.148459 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.265155 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 6.221661 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 10.746519 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 15.745171 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 17.668592 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 7.423656 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 16.503731 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 40.409561 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 44.159676 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 42.009758 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25106 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5517 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028608 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26810, Sbi_jg33760 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8448 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00011696, GOSA_00011697 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl73548, Sgl73561, Sgl77069 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000005999, gene:ENSEOMG00000007387 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0007660, CQ.Regalona.r1.9BG0007720 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30131360 |
| Apiaceae | Apium graveolens | 1 | Ag1G01883 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G009800 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707058 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3540.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G19356 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G03070.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004003m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g14070.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g065720.2N, BniB04g014290.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1010 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1056 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g06100 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.2511s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g11950 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3285 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.698 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00005877, Pov_00011653 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G30132, Lb6G30133 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.630, BH05.682, CH05.787 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0526240, gene-QOZ80_6BG0480160 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_007061 |
| Poaceae | Oryza coarctata | 2 | Oco05G016270, Oco06G016900 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g31010.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G271300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0700146, Pt_Chr0700327 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G006250, Chr11G013180 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G577700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG052900, gene_TRIDC5BG057030 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G361500.2, TraesCS5B02G364100.4 ... |
| Poaceae | Zea mays | 1 | Zm00001eb320420_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-50734 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29895 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.224, evm.TU.LG24.470 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g15470 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1678 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19844 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6394 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13603 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.57 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011667 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13257 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12368 |
| Salicaceae | Populus euphratica | 1 | populus_peu19822 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633597 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014261 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.21232_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1875 |
| Zosteraceae | Zostera marina | 1 | Zosma03g19600.v3.1 |