Basic Information
Locus ID:
Ag1G01861
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
PHD - plant homeodomain finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 196716932 | 196727110 | - | Ag1G01861 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 50,249.90 Da | 39.76 | 84.99 | -0.31 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05410.1 | Protein of unknown function (DUF1423). | 0 |
| RefSeq | XP_017226777.1 | PREDICTED: protein OBERON 1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A175YJP8 | PHD_Oberon domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030641 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 18.825235 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.948941 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.643984 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 7.221169 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.703211 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.878788 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.189873 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.020654 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 2.928181 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 3.543844 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 4.23549 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 3.923593 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 3.417605 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 3.810174 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.326902 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.308786 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.904217 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 3.498167 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.191507 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.937788 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 6.315098 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.561869 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.118147 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 3.394691 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.68367 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.528339 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.800663 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.189901 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.932673 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.997427 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.212266 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.046275 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.77085 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.853188 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.641326 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.845703 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.239205 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.515998 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.302626 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.983202 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.994311 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.509957 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 4.081913 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 7.316875 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 6.557848 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 11.2007 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 8.625215 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 3.964023 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 6.246783 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.365754 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg11162 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2550 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah029442 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1303, Sbi_jg35264 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3417 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003584 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl74109, Sgl77590 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008043, gene:ENSEOMG00000038783 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0012980, CQ.Regalona.r1.7BG0014910 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30236630 |
| Apiaceae | Apium graveolens | 4 | Ag1G01861, Ag8G01581, Ag8G01582, Ag9G01758 |
| Arecaceae | Cocos nucifera | 4 | COCNU_01G017830, COCNU_01G017840, COCNU_03G001020 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103712345, gene-LOC103716965 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1896.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G29245 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G05410.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007544m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g04290.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g063950.2N, BniB06g045140.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1361 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1451 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g05250 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g04280 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-5428, nbisL1-mrna-5429 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1026 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00026201, Pov_00031594 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24575, Lb4G24628 |
| Poaceae | Echinochloa crus-galli | 3 | BH01.751, CH01.748, Contig309.101 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3BG0261630 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0510160.1, HORVU.MOREX.r3.5HG0510200.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061930 |
| Poaceae | Oryza coarctata | 2 | Oco05G023450, Oco06G024350 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g53590.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G082700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107137 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G005340, Chr12G037750 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G613500 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5BG060410 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G385300.3, TraesCS5B02G390300.3 ... |
| Poaceae | Zea mays | 1 | Zm00001eb057100_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-15051 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g490 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1758, evm.TU.LG11.1110 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g12660 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.433 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1482 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6501 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6164 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000019l.960, evm.TU.utg000019l.961 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012945 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6359 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2134 |
| Salicaceae | Populus euphratica | 2 | populus_peu21393, populus_peu37322 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132610305, gene-LOC132642185 |
| Solanaceae | Solanum chilense | 15 | SOLCI000617900, SOLCI000789300, SOLCI002254800 ... |
| Solanaceae | Solanum pennellii | 9 | gene-LOC107022368, gene-LOC107022370, gene-LOC107023014 ... |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G0750 |
| Zosteraceae | Zostera marina | 2 | Zosma01g28380.v3.1, Zosma02g20870.v3.1 |