Basic Information
Locus ID:
Ag1G01816
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
lysM domain receptor-like kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 196025737 | 196028738 | - | Ag1G01816 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.99 | 68,115.86 Da | 40.12 | 95.14 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 180 | 220 | 4.2318E-5 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 352 | 588 | 9.1E-40 | IPR000719 |
| Pfam | PF01476 | LysM domain | 182 | 214 | 0.0011 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 315 | 591 | 1.5E-65 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 398 | 604 | 3.7E-54 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 302 | 397 | 7.1E-15 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 167 | 226 | 1.6E-7 | IPR036779 |
| SMART | SM00257 | LysM_2 | 181 | 221 | 2.8E-4 | IPR018392 |
| SMART | SM00220 | serkin_6 | 332 | 598 | 2.4E-27 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 180 | 227 | 9.685778 | IPR018392 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 18 | 6.0 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 264 | 598 | 31.961933 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 442 | 454 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017226686.1 | PREDICTED: serine/threonine receptor-like kinase NFP [Daucus carota subsp. sativus] | 0 |
| Q0GXS4 | Serine/threonine receptor-like kinase NFP OS=Medicago truncatula OX=3880 GN=NFP PE=1 SV=1 | 0 | |
| TrEMBL | A0A166H4A6 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002357 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 13.978722 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 18.097443 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 18.432644 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 17.408377 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 17.93726 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 25.115261 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 25.564577 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 26.559364 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 15.343319 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 15.938725 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 18.810438 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 16.259817 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 16.916605 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 17.416845 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.842989 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 9.129625 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.540632 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 18.109547 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 11.533988 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 22.300589 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 30.506773 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 14.31987 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 13.495851 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 10.286709 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 12.215879 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 16.294348 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 11.494529 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 14.136779 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 11.161786 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 21.540516 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 17.607183 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 14.07217 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 47.303028 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 26.979534 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 45.369347 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 37.351498 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 36.905048 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 40.513062 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 13.175624 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 18.917997 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 16.764414 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 33.618103 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 28.873787 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 39.878349 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 33.962368 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 32.343266 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 29.413719 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 13.137462 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 12.070683 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 14.69832 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg12638, jg27829, jg30621 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6423 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah029151, Ah029152, Ah029153 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g166020 |
| Amaranthaceae | Salicornia bigelovii | 8 | Sbi_jg1092, Sbi_jg1096, Sbi_jg1097, Sbi_jg1100, Sbi_jg1101 ... |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg3601, Seu_jg3602, Seu_jg3604, Seu_jg3605 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00022882, GOSA_00022885 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl74255, Sgl74334, Sgl74335, Sgl77824 |
| Amaranthaceae | Chenopodium album | 8 | gene:ENSEOMG00000006629, gene:ENSEOMG00000008352 ... |
| Amaranthaceae | Chenopodium quinoa | 7 | CQ.Regalona.r1.7AG0011420, CQ.Regalona.r1.7AG0011430 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30235780 |
| Apiaceae | Apium graveolens | 4 | Ag1G01816, Ag4G01026, Ag6G01493, Ag9G01739 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G000280, COCNU_07G007720 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103699281, gene-LOC103702746, gene-LOC103723952 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.2472.V1.1, AsparagusV1_08.1511.V1.1 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri14G04152, Ftri17G21238, Ftri6G11221, FtriNA20598 |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq07G0375, Ceq09G0744 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl07G0386, Cgl07G0387, Cgl09G0806 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.913 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00019995, Pov_00029367 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G07902 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.4457, AH07.3007, BH07.2832, CH01.5067, CH07.2912 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0140990, gene-QOZ80_2BG0196610 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0394920.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_024435, gene-QYE76_068469, gene-QYE76_069786 |
| Poaceae | Oryza coarctata | 4 | Oco03G018260, Oco04G019010, Oco06G007610, Oco06G007620 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g45750.1, LOC_Os03g13080.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G431400, gene-BS78_04G238300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0203728 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G023440 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G409200, Tel6E01G481500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG009120, gene_TRIDC4BG041760 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G061400.1.cds1, TraesCS4B02G236800.1.cds1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb009380_P001, Zm00001eb187300_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-22254, nbis-gene-4011 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g16884, Zma_g4111 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.949, evm.TU.LG12.794 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g17220 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.286, evm.TU.Scaffold_3_RagTag.375 ... |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-1548, nbisL1-mrna-1549, nbisL1-mrna-17166 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-6967, nbisL1-mrna-7562 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-6018, nbisL1-mrna-6113 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000019l.413, add.evm.TU.utg000019l.445 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012766 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-15563, nbisL1-mrna-19333, nbisL1-mrna-6402 ... |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-2292, nbisL1-mrna-3136, nbisL1-mrna-3139 |
| Salicaceae | Populus euphratica | 5 | populus_peu07461, populus_peu07462, populus_peu14290 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132608981, gene-LOC132609067, gene-LOC132622935 |
| Solanaceae | Solanum chilense | 4 | SOLCI002407300, SOLCI002660500, SOLCI003953000 ... |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107009582, gene-LOC107030506, gene-LOC107030507 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.20256_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G2121 |
| Zosteraceae | Zostera marina | 1 | Zosma06g28740.v3.1 |