Basic Information
Locus ID:
Ag1G01796
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
MATH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 195788738 | 195800255 | + | Ag1G01796 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 128,979.84 Da | 51.53 | 71.10 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 69 | 191 | 3.42858E-36 | IPR002083 |
| Pfam | PF00917 | MATH domain | 75 | 192 | 9.1E-26 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 69 | 195 | 4.74E-35 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 53 | 197 | 8.3E-39 | IPR008974 |
| SMART | SM00061 | math_3 | 73 | 174 | 2.7E-16 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 68 | 190 | 30.260769 | IPR002083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 770 | 785 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 759 | 792 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 564 | 594 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 687 | 707 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 832 | 851 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 446 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 373 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 564 | 606 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43560.1 | TRAF-like superfamily protein. | 0 |
| RefSeq | XP_017226630.1 | PREDICTED: MATH domain-containing protein At5g43560-like isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q8RY18 | TNF receptor-associated factor homolog 1a OS=Arabidopsis thaliana OX=3702 GN=TRAF1A PE=1 SV=1 | 0 | |
| TrEMBL | F6HE19 | MATH domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_05s0020g04980 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 12.852975 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 9.492677 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 11.011641 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 12.078013 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.301184 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 16.696098 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 13.731446 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 15.316943 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 16.726648 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 17.42898 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 17.591154 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 18.530304 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 15.952996 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 14.734426 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.030191 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.653918 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.854335 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.83586 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.410922 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.747587 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 6.67183 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 7.77836 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.852146 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.388598 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 6.877106 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 9.60638 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 6.508269 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 6.566804 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 8.698395 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.629796 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.078336 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.679688 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.448604 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.106394 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.061981 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.548126 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.729246 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.752636 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 12.127862 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.437933 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.087013 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 5.192255 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 5.510236 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 10.482015 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 9.072436 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 4.976987 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 7.573759 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 10.070746 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 10.150478 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.544064 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg11112, jg11114, jg11115, jg11117, jg5785 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15989 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah018167, Ah018168 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g056680, BVRB_3g056690 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15221, Sbi_jg56036 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26516 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00020194, GOSA_00028970 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02233, Sgl07385 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014520, gene:ENSEOMG00000031572 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0009250, CQ.Regalona.r1.3BG0009260 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30235370 |
| Apiaceae | Apium graveolens | 3 | Ag1G01796, Ag2G01752, Ag9G01723 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G012890, scaffold002855G000040 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103698654, gene-LOC103710177, gene-LOC120105140 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_06.1959.V1.1, AsparagusV1_08.873.V1.1 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri14G22685, Ftri14G26879, Ftri14G33902, Ftri7G03194 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G04300.3, AT4G16045.1, AT5G43560.1, AT5G52330.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10003141m.g.v1.0, Thhalv10006644m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g03110.v2.2, Sp1g28310.v2.2, Sp2g08380.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g001650.2N, BniB03g000800.2N, BniB03g035720.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0417 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0426 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno01g01790, gene.Cymno01g01800, gene.Cymno06g12370 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0359s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g11140 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-4192, nbisL1-mrna-5008 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.867 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00022802, Pov_00025885 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G11578, Lb5G27931, Lb7G34623 |
| Poaceae | Echinochloa crus-galli | 9 | AH02.3449, AH05.1809, AH05.3941, BH02.3514, BH05.1975 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_1AG0035330, gene-QOZ80_1BG0085390 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0078900.1, HORVU.MOREX.r3.3HG0292700.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_000620, gene-QYE76_014820 |
| Poaceae | Oryza coarctata | 6 | Oco01G021660, Oco02G022260, Oco09G013710, Oco10G013790 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g56800.1, LOC_Os05g43280.1, LOC_Os12g40520.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_03G293900, gene-BS78_08G131100 ... |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0504255, Pt_Chr0504307, Pt_Chr0601565, Pt_Chr0601594 ... |
| Poaceae | Sporobolus alterniflorus | 11 | Chr01G017330, Chr02G008210, Chr03G017370, Chr04G018420 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G531300, Tel3E01G506200, Tel5E01G129800 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG048410, gene_TRIDC1BG055060 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1A02G325900.1, TraesCS1B02G339200.1 ... |
| Poaceae | Zea mays | 10 | Zm00001eb030930_P001, Zm00001eb030950_P001 ... |
| Poaceae | Zoysia japonica | 5 | nbis-gene-11774, nbis-gene-14379, nbis-gene-31227 ... |
| Poaceae | Zoysia macrostachya | 7 | Zma_g11262, Zma_g25278, Zma_g25279, Zma_g25280, Zma_g26903 ... |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.1301, evm.TU.LG11.1474, evm.TU.LG14.599 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g03410 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.1243, evm.TU.Scaffold_6_RagTag.830 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1569, nbisL1-mrna-15849 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13200, nbisL1-mrna-17352 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-2504, nbisL1-mrna-708 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.516, evm.TU.utg000019l.488 |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00001747, Maker00001875, Maker00008388 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15247, nbisL1-mrna-6221 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1945, nbisL1-mrna-4235 |
| Salicaceae | Populus euphratica | 2 | populus_peu07485, populus_peu21506 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132610626, gene-LOC132617755, gene-LOC132642726 ... |
| Solanaceae | Solanum chilense | 4 | SOLCI002175000, SOLCI002175100, SOLCI004834300 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107014504, gene-LOC107021306, gene-LOC107023308 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.14894_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1206 |
| Zosteraceae | Zostera marina | 2 | Zosma06g23740.v3.1, Zosma06g24000.v3.1 |