Basic Information
Locus ID:
Ag1G01741
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 195182496 | 195190850 | + | Ag1G01741 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 85,395.54 Da | 59.29 | 63.11 | -0.90 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 722 | 764 | 1.25747E-18 | - |
| Pfam | PF13639 | Ring finger domain | 722 | 764 | 2.9E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 722 | 767 | 4.42E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 690 | 768 | 1.4E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 723 | 763 | 1.3E-8 | IPR001841 |
| SMART | SM00744 | ringv_2 | 722 | 764 | 0.0026 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 723 | 764 | 12.622055 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 599 | 619 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 479 | 495 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 383 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 375 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 512 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 399 | 420 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 141 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04790.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017226548.1 | PREDICTED: E3 ubiquitin-protein ligase RNF12 [Daucus carota subsp. sativus] | 0 |
| Q9FKX5 | NEP1-interacting protein-like 1 OS=Arabidopsis thaliana OX=3702 GN=ATL27 PE=2 SV=1 | 0 | |
| TrEMBL | A0A175YI74 | RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030784 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 24.179403 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 22.423733 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 26.692812 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 25.879299 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 25.794355 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 35.071716 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 24.688318 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 29.568941 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 40.117966 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 37.712177 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 41.836926 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 39.056751 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 36.294735 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 25.792212 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 10.549098 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 14.733882 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 13.467443 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 15.303329 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 12.230888 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 13.252006 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 14.870707 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 16.948597 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 15.577085 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 17.488171 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 17.023151 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 19.98576 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 14.711078 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 17.453516 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 18.833242 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 6.778581 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 8.459935 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 7.11153 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 10.241022 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 12.507672 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 12.362064 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 9.949716 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.560122 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 8.043072 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 28.45343 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 17.796783 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 12.256071 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 12.325332 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 19.175117 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 42.744431 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 35.795338 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 12.337327 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 33.979298 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 20.461195 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 20.49992 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 17.605997 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg5857 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5493 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah028555, Ah028557 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26746, Sbi_jg33809 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8507 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011738 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73611, Sgl77171 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006492, gene:ENSEOMG00000038040 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0008230, CQ.Regalona.r1.9BG0007890 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30240750 |
| Apiaceae | Apium graveolens | 2 | Ag1G01741, Ag9G01657 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103706984, gene-LOC103720151 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.115.V1.1, AsparagusV1_04.298.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | FtriNA18252 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G04790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007101m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g03630.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g046060.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0774 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0827 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g00910 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g07690 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 4 | nbisL1-mrna-12044, nbisL1-mrna-12045, nbisL1-mrna-12046 ... |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.625 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021315 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G07742, Lb2G09045 |
| Poaceae | Echinochloa crus-galli | 8 | AH02.2712, AH08.630, AH09.1531, BH02.2794, BH08.689 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0028280, gene-QOZ80_1BG0078450 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0181290.1, HORVU.MOREX.r3.3HG0279370.1 |
| Poaceae | Oryza coarctata | 4 | Oco01G017020, Oco02G017240, Oco07G010530, Oco08G010280 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g48310.1, LOC_Os04g43220.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G227600, gene-BS78_06G156700 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0302112, Pt_Chr0302135, Pt_Chr0602307, Pt_Chr0605121 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr03G013300, Chr08G013470, Chr23G008960, Chr25G010700 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G660800, Tel3E01G452500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG055500, gene_TRIDC2BG058290 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G385400.2, TraesCS2B02G402300.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb157090_P001, Zm00001eb360110_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-37047, nbis-gene-41712 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g20024, Zma_g26600 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.1187, evm.TU.LG12.522, evm.TU.LG19.271 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g02630 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15710 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21148 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-826 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.601 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007227 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15163 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4350 |
| Salicaceae | Populus euphratica | 1 | populus_peu34883 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609156 |
| Solanaceae | Solanum chilense | 1 | SOLCI004502900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031736 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.3481_chr02_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G0097 |
| Zosteraceae | Zostera marina | 1 | Zosma03g27390.v3.1 |