Basic Information
Locus ID:
Ag1G01729
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Receptor like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 194995820 | 194998402 | + | Ag1G01729 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.13 | 83,683.21 Da | 48.15 | 84.43 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 427 | 702 | 1.11203E-90 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 426 | 699 | 3.5E-28 | IPR001245 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 159 | 272 | 3.3E-6 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 89 | 313 | 1.6E-26 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 397 | 702 | 9.27E-51 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 77 | 153 | 3.6E-12 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 503 | 727 | 2.2E-44 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 381 | 497 | 1.2E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 154 | 288 | 7.3E-17 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 421 | 708 | 27.099838 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 294 | 10.054235 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 110 | 133 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32800.1 | protein kinase family protein. | 0 |
| RefSeq | XP_017223761.1 | PREDICTED: receptor like protein kinase S.2 [Daucus carota subsp. sativus] | 0 |
| O48837 | Receptor like protein kinase S.2 OS=Arabidopsis thaliana OX=3702 GN=LECRKS2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A175YII0 | Receptor like protein kinase S.2 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030796 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 14.855913 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 15.453359 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 19.983639 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 29.459444 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 34.341572 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 43.522266 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 36.643085 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 23.659615 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 31.920723 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 23.704679 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 21.158569 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 9.686586 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 14.573212 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 6.835409 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 6.227078 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 12.625315 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.092291 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 10.901024 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.804917 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 28.227865 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 12.840913 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.083321 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.932162 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.339866 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.554624 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.632722 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.072937 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.898469 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.576978 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.785274 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.696034 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.62997 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 9.127022 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.868459 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 12.278125 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.295726 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.775521 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.737756 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.202039 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.90831 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.32511 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 85.877457 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 57.765415 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 7.158266 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 6.200111 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 91.89415 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 28.450327 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 28.54043 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 3.638114 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.432949 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12822 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4820 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022547 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g220560 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59492, Sbi_jg63162 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23736 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020675 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02845, Sgl07966 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000031007, gene:ENSEOMG00000042728 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3BG0026570, CQ.Regalona.r1.3BG0026590 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30241300 |
| Apiaceae | Apium graveolens | 3 | Ag1G01729, Ag5G02153, Ag8G02168 |
| Arecaceae | Cocos nucifera | 1 | scaffold000335G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103697920 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.195.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G34015, Ftri17G18959 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G32800.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016233m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g15190.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g020640.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0736 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0783 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g04650, gene.Cymno05g03350 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g22860 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4183 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.570 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021348 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0682290, gene-QOZ80_9BG0707900 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0468050.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_003923, gene-QYE76_006513 |
| Poaceae | Oryza coarctata | 1 | Oco22G005680 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g25860.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G297600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0704991 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G007660, Chr17G006930 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G276500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG026750, gene_TRIDC5BG027950 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G161500.1.cds1, TraesCS5B02G159000.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb344770_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-48781 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18732 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG07.38 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g07000 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.982 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15684 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-929 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-850 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000011l.236 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22879 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4375 |
| Salicaceae | Populus euphratica | 3 | populus_peu01377, populus_peu24227, populus_peu24237 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132611385 |
| Solanaceae | Solanum chilense | 1 | SOLCI002050700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029130 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.20497_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G2155 |