halophFGD

Basic Information

Locus ID: Ag1G01711

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the glycosyltransferase 8 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	194800300	194804712	+	Ag1G01711

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.17	74,909.12 Da	48.04	88.83	-0.47

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd06429	GT8_like_1	340	634	2.99597E-123	-
Pfam	PF01501	Glycosyl transferase family 8	309	620	5.0E-93	IPR002495
SUPERFAMILY	SSF53448	Nucleotide-diphospho-sugar transferases	340	644	8.72E-70	IPR029044
Gene3D	G3DSA:3.90.550.10	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	343	643	1.5E-46	IPR029044
MobiDBLite	mobidb-lite	consensus disorder prediction	166	180	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	158	186	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	94	112	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	87	112	-	-
Coils	Coil	Coil	271	291	-	-

Gene Ontology

Molecular Function:

GO:0016757 (glycosyltransferase activity)

KEGG Pathway

KO Term:

K13648 (alpha-1,4-galacturonosyltransferase [EC:2.4.1.43])

Pathway:

ko00520 (Amino sugar and nucleotide sugar metabolism) map00520 (Amino sugar and nucleotide sugar metabolism)

Reaction:

R05191 (n UDP-D-galacturonate <=> n UDP + Pectin)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G47780.1	galacturonosyltransferase 4. Encodes a protein with putative galacturonosyltransferase activity.
RefSeq	XP_017226649.1	PREDICTED: probable galacturonosyltransferase 4 [Daucus carota subsp. sativus]
Swiss-Prot	Q93ZX7	Probable galacturonosyltransferase 4 OS=Arabidopsis thaliana OX=3702 GN=GAUT4 PE=2 SV=1
TrEMBL	A0A175YIB1	Hexosyltransferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030824 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	41.012192	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	35.341267	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	35.812336	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	39.92321	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	35.148605	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	36.325493	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	32.010616	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	23.750929	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	103.425743	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	101.34053	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	108.173508	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	91.809044	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	86.994713	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	74.403465	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	103.121132	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	107.087952	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	89.081146	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	81.48555	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	87.120918	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	82.53492	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	69.826759	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	98.022598	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	101.195923	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	90.692238	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	83.729919	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	103.221977	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	85.944	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	75.674278	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	104.417198	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	31.36652		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	42.477203		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	30.923321		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	27.117659		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	34.878174		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	28.085257		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	18.817987		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	20.977737		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	20.117971		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	93.770386	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	55.101692	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	40.032776	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	22.449139	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	44.917149	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	57.189625	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	83.282639	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	22.615929	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	121.176636	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	60.033443	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	50.877205	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	59.733624	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg11851, jg21753, jg24728, jg38531, jg5793
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1376, gene_7383
Amaranthaceae	Atriplex hortensis	3	Ah009388, Ah017237, Ah023114
Amaranthaceae	Beta vulgaris	2	BVRB_8g184210, BVRB_9g212470
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg10912, Sbi_jg10914, Sbi_jg25778, Sbi_jg4385 ... Sbi_jg47422, Sbi_jg49300, Sbi_jg9605
Amaranthaceae	Salicornia europaea	4	Seu_jg19038, Seu_jg21664, Seu_jg21665, Seu_jg5806
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000340, GOSA_00012461, GOSA_00018757
Amaranthaceae	Suaeda glauca	6	Sgl11211, Sgl16606, Sgl41771, Sgl46571, Sgl55604, Sgl60818
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000008981, gene:ENSEOMG00000016275 ... gene:ENSEOMG00000016387, gene:ENSEOMG00000030257, gene:ENSEOMG00000033053, gene:ENSEOMG00000036783, gene:ENSEOMG00000045706, gene:ENSEOMG00000047046, gene:ENSEOMG00000051576
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.1AG0005700, CQ.Regalona.r1.2BG0023960 ... CQ.Regalona.r1.5AG0027880, CQ.Regalona.r1.7BG0001710, CQ.Regalona.r1.8BG0000060, CQ.Regalona.r1.9AG0001460
Anacardiaceae	Pistacia vera	4	pistato.v30003430, pistato.v30025850, pistato.v30066330 ... pistato.v30108770
Apiaceae	Apium graveolens	3	Ag10G00267, Ag1G01711, Ag5G01116
Arecaceae	Cocos nucifera	7	COCNU_01G013080, COCNU_07G008710, COCNU_09G000910 ... COCNU_11G011170, scaffold000650G000020, scaffold016239G000100, scaffold045783G000010
Arecaceae	Phoenix dactylifera	9	gene-LOC103696144, gene-LOC103696960, gene-LOC103701120 ... gene-LOC103701177, gene-LOC103702363, gene-LOC103702796, gene-LOC103710668, gene-LOC103720912, gene-LOC103720921
Asparagaceae	Asparagus officinalis	8	AsparagusV1_01.1144.V1.1, AsparagusV1_01.1145.V1.1 ... AsparagusV1_01.3287.V1.1, AsparagusV1_01.512.V1.1, AsparagusV1_04.1381.V1.1, AsparagusV1_04.600.V1.1, AsparagusV1_05.2164.V1.1, AsparagusV1_05.734.V1.1
Asteraceae	Flaveria trinervia	6	Ftri11G26352, Ftri13G02954, Ftri5G18793, Ftri7G22982 ... FtriNA19628, FtriNA24316
Brassicaceae	Arabidopsis thaliana	4	AT2G46480.1, AT3G61130.1, AT4G38270.1, AT5G47780.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10000819m.g.v1.0, Thhalv10005820m.g.v1.0 ... Thhalv10024734m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp2g12520.v2.2, Sp4g28480.v2.2, Sp5g02250.v2.2 ... Sp7g37450.v2.2
Brassicaceae	Brassica nigra	6	BniB02g064450.2N, BniB02g089750.2N, BniB04g009990.2N ... BniB06g062190.2N, BniB08g075230.2N, BniS06172g250.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G0452, Ceq02G1435, Ceq07G1819
Casuarinaceae	Casuarina glauca	5	Cgl02G0481, Cgl02G1479, Cgl07G1975, Cgl07G1982, Cgl07G2023
Cymodoceaceae	Cymodocea nodosa	5	gene.Cymno01g04630, gene.Cymno02g10290, gene.Cymno06g09670 ... gene.Cymno14g07660, gene.Cymno18g02790
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate02g03430, gene.Thate02g03440, gene.Thate05g09190 ... gene.Thate06g06710, gene.Thate09g19100
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-3602, nbisL1-mrna-7766
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG04.982, evm.TU.LG08.425, evm.TU.LG12.1305
Plantaginaceae	Plantago ovata	3	Pov_00006118, Pov_00007056, Pov_00027481
Plumbaginaceae	Limonium bicolor	3	Lb2G10516, Lb4G21745, Lb4G22952
Poaceae	Echinochloa crus-galli	17	AH01.990, AH03.2339, AH03.2713, AH06.3035, AH08.1105 ... AH08.1932, BH03.2470, BH03.2856, BH06.2822, BH08.1097, BH08.2025, CH01.1181, CH03.2664, CH03.3062, CH08.1208, CH08.2203, Contig181.188
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_3AG0220960, gene-QOZ80_3BG0266120 ... gene-QOZ80_6AG0528440, gene-QOZ80_6AG0539030, gene-QOZ80_6AG0551370, gene-QOZ80_6BG0482450, gene-QOZ80_6BG0492360, gene-QOZ80_6BG0504960, gene-QOZ80_8AG0625950, gene-QOZ80_8BG0653990
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.1HG0083170.1, HORVU.MOREX.r3.4HG0334870.1 ... HORVU.MOREX.r3.5HG0489550.1, HORVU.MOREX.r3.5HG0498770.1, HORVU.MOREX.r3.7HG0677820.1, HORVU.MOREX.r3.7HG0751510.1
Poaceae	Lolium multiflorum	9	gene-QYE76_006047, gene-QYE76_006813, gene-QYE76_012642 ... gene-QYE76_024741, gene-QYE76_029813, gene-QYE76_037006, gene-QYE76_037081, gene-QYE76_062569, gene-QYE76_062571
Poaceae	Oryza coarctata	12	Oco11G017080, Oco12G017270, Oco12G017880, Oco15G006290 ... Oco15G011830, Oco16G006130, Oco16G010740, Oco17G007490, Oco17G010220, Oco18G007780, Oco18G010200, Oco19G002830
Poaceae	Oryza sativa	8	LOC_Os06g49810.1, LOC_Os06g51160.1, LOC_Os08g23780.1 ... LOC_Os08g38740.1, LOC_Os09g30280.1, LOC_Os09g36180.1, LOC_Os09g36190.1, LOC_Os10g21890.2
Poaceae	Paspalum vaginatum	6	gene-BS78_01G120600, gene-BS78_02G219200 ... gene-BS78_02G252500, gene-BS78_07G176500, gene-BS78_10G185900, gene-BS78_10G216500
Poaceae	Puccinellia tenuiflora	10	Pt_Chr0104938, Pt_Chr0203653, Pt_Chr0206882, Pt_Chr0207175 ... Pt_Chr0401854, Pt_Chr0404015, Pt_Chr0700005, Pt_Chr0700993, Pt_Chr0701642, Pt_Chr0701673
Poaceae	Sporobolus alterniflorus	14	Chr01G008040, Chr0G007290, Chr0G021810, Chr10G007770 ... Chr10G022450, Chr12G029350, Chr14G010370, Chr14G015950, Chr14G015960, Chr14G015970, Chr16G012540, Chr17G011860, Chr21G010510, Chr21G014990
Poaceae	Thinopyrum elongatum	7	Tel1E01G605700, Tel4E01G056800, Tel5E01G410300 ... Tel5E01G508500, Tel7E01G424000, Tel7E01G956900, Tel7E01G957700
Poaceae	Triticum dicoccoides	12	gene_TRIDC1AG054490, gene_TRIDC1BG062360 ... gene_TRIDC4AG043890, gene_TRIDC4BG004900, gene_TRIDC4BG020170, gene_TRIDC5AG040030, gene_TRIDC5AG047340, gene_TRIDC5BG042430, gene_TRIDC5BG051060, gene_TRIDC7AG030510, gene_TRIDC7AG076420, gene_TRIDC7BG021400
Poaceae	Triticum aestivum	18	TraesCS1A02G370800.2, TraesCS1B02G390000.1 ... TraesCS1D02G376900.2, TraesCS4A02G283700.1, TraesCS4B02G029400.1, TraesCS4D02G026900.1, TraesCS5A02G256400.1, TraesCS5A02G319800.1, TraesCS5B02G255700.1, TraesCS5B02G320100.2, TraesCS5D02G264700.1, TraesCS5D02G325800.2, TraesCS7A02G239100.1, TraesCS7A02G550200.1, TraesCS7B02G134900.2, TraesCS7B02G473600.1, TraesCS7D02G237000.1, TraesCSU02G105800.2
Poaceae	Zea mays	8	Zm00001eb053500_P001, Zm00001eb101530_P002 ... Zm00001eb103470_P001, Zm00001eb170740_P001, Zm00001eb217140_P002, Zm00001eb228580_P003, Zm00001eb239160_P001, Zm00001eb319550_P001
Poaceae	Zoysia japonica	3	nbis-gene-3390, nbis-gene-35292, nbis-gene-46575
Poaceae	Zoysia macrostachya	4	Zma_g3043, Zma_g32212, Zma_g32751, Zma_g33448
Portulacaceae	Portulaca oleracea	9	evm.TU.LG01.2036, evm.TU.LG04.1919, evm.TU.LG04.2367 ... evm.TU.LG06.418, evm.TU.LG07.1556, evm.TU.LG14.1217, evm.TU.LG15.1697, evm.TU.LG19.1197, evm.TU.LG24.1201
Posidoniaceae	Posidonia oceanica	4	gene.Posoc02g11470, gene.Posoc02g11480, gene.Posoc03g09130 ... gene.Posoc07g07320
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_2_RagTag.26, evm.TU.Scaffold_5_RagTag.343 ... evm.TU.Scaffold_7_RagTag.1414
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-10914, nbisL1-mrna-20, nbisL1-mrna-20079 ... nbisL1-mrna-20212, nbisL1-mrna-53, nbisL1-mrna-9907
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-13551, nbisL1-mrna-15725, nbisL1-mrna-4756
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-10472, nbisL1-mrna-13361, nbisL1-mrna-7121 ... nbisL1-mrna-7122, nbisL1-mrna-9296
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000002l.240, evm.TU.utg000006l.528 ... evm.TU.utg000009l.1223, evm.TU.utg000018l.759
Rhizophoraceae	Kandelia obovata	4	Maker00003509, Maker00005482, Maker00011722, Maker00013386
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-14079, nbisL1-mrna-3242, nbisL1-mrna-9062 ... nbisL1-mrna-9241
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-11251, nbisL1-mrna-12100, nbisL1-mrna-24141 ... nbisL1-mrna-6971
Salicaceae	Populus euphratica	6	populus_peu08426, populus_peu10498, populus_peu16911 ... populus_peu26567, populus_peu27806, populus_peu31744
Solanaceae	Lycium barbarum	4	gene-LOC132599398, gene-LOC132616213, gene-LOC132632977 ... gene-LOC132645634
Solanaceae	Solanum chilense	4	SOLCI002559700, SOLCI003417600, SOLCI004079300 ... SOLCI005586000
Solanaceae	Solanum pennellii	4	gene-LOC107002634, gene-LOC107006505, gene-LOC107007965 ... gene-LOC107017714
Tamaricaceae	Reaumuria soongarica	4	STRG.29206_chr11_+, STRG.8587_chr06_-, gene_11360, gene_2413
Tamaricaceae	Tamarix chinensis	4	TC03G2722, TC08G0010, TC09G2127, TC12G0838
Zosteraceae	Zostera marina	5	Zosma02g06360.v3.1, Zosma04g21470.v3.1, Zosma05g21800.v3.1 ... Zosma05g23600.v3.1, Zosma06g05150.v3.1