halophFGD

Basic Information

Locus ID: Ag1G01685

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: C-terminal to LisH motif.

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	194127926	194133314	+	Ag1G01685

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.98	65,921.16 Da	45.32	89.17	-0.29

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	265	557	1.62774E-47	-
Pfam	PF00400	WD domain, G-beta repeat	311	345	0.0053	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	475	514	0.22	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	519	557	3.9E-8	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	263	299	6.5E-5	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	259	557	1.28E-62	IPR036322
Gene3D	G3DSA:2.130.10.10	-	256	400	4.2E-33	IPR015943
Gene3D	G3DSA:2.130.10.10	-	401	577	4.4E-31	IPR015943
SMART	SM00320	WD40_4	261	300	2.8E-8	IPR001680
SMART	SM00320	WD40_4	306	345	5.9E-6	IPR001680
SMART	SM00320	WD40_4	473	515	0.051	IPR001680
SMART	SM00320	WD40_4	389	429	25.0	IPR001680
SMART	SM00320	WD40_4	518	558	2.2E-12	IPR001680
SMART	SM00320	WD40_4	430	469	6.0	IPR001680
SMART	SM00320	WD40_4	348	387	0.11	IPR001680
SMART	SM00668	ctlh	95	152	7.0E-5	IPR006595
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	268	303	10.732868	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	525	560	14.78598	IPR001680
ProSiteProfiles	PS50896	LIS1 homology (LisH) motif profile.	62	94	8.618607	IPR006594
ProSiteProfiles	PS50897	C-terminal to LisH (CTLH) motif profile.	100	152	10.271212	IPR006595
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	313	354	12.246197	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	268	309	13.449252	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	313	350	9.282875	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	525	560	12.209223	-
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	287	301	-	IPR019775
MobiDBLite	mobidb-lite	consensus disorder prediction	567	590	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K22382 (WD repeat-containing protein 26)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G08560.1	transducin family protein / WD-40 repeat family protein.
RefSeq	XP_017227004.1	PREDICTED: WD repeat-containing protein 26-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9FNN2	WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1
TrEMBL	A0A175YIP0	WD repeat-containing protein 26 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030291 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	24.004343	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	22.890284	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	25.853968	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	24.361347	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	24.611683	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	28.023018	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	29.484547	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	34.950336	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	42.667549	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	39.898972	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	47.489811	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	50.983662	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	45.187283	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	34.611656	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	22.280199	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	21.872135	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	22.018311	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	25.602406	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	23.367369	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	30.136894	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	26.951094	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	22.797255	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	24.130888	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	21.967831	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	25.071795	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	27.883249	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	26.560383	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	25.700697	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	24.594805	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	18.820068		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	21.650396		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	15.714005		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	25.020472		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	22.725765		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	23.967287		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	17.595427		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	13.377625		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	13.356461		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	35.825672	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	27.666433	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	24.118397	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	33.744606	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	33.485558	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	40.368523	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	39.122093	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	31.732061	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	33.358082	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	28.762903	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	26.514734	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	25.321211	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg16228, jg19040, jg19043, jg19045, jg19048, jg24101 ... jg37461
Aizoaceae	Mesembryanthemum crystallinum	2	gene_17794, gene_5317
Amaranthaceae	Atriplex hortensis	4	Ah027031, Ah029123, Ah037565, Ah037594
Amaranthaceae	Beta vulgaris	2	BVRB_6g132130, BVRB_7g166270
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg13522, Sbi_jg52363, Sbi_jg59153, Sbi_jg63483
Amaranthaceae	Salicornia europaea	2	Seu_jg23419, Seu_jg9489
Amaranthaceae	Suaeda aralocaspica	6	GOSA_00023186, GOSA_00023187, GOSA_00023189, GOSA_00023377 ... GOSA_00023378, GOSA_00029520
Amaranthaceae	Suaeda glauca	4	Sgl33515, Sgl38864, Sgl72428, Sgl75977
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000001394, gene:ENSEOMG00000003013 ... gene:ENSEOMG00000007855, gene:ENSEOMG00000026627, gene:ENSEOMG00000036103, gene:ENSEOMG00000040929, gene:ENSEOMG00000052547
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.6AG0021550, CQ.Regalona.r1.6BG0022730 ... CQ.Regalona.r1.7AG0011230, CQ.Regalona.r1.7BG0013400, CQ.Regalona.r1.9AG0000100, CQ.Regalona.r1.9BG0022010
Anacardiaceae	Pistacia vera	8	pistato.v30013160, pistato.v30015190, pistato.v30201810 ... pistato.v30201820, pistato.v30202660, pistato.v30202690, pistato.v30202700, pistato.v30212900
Apiaceae	Apium graveolens	4	Ag10G00843, Ag1G01685, Ag5G01877, Ag8G01943
Arecaceae	Cocos nucifera	6	COCNU_01G015670, COCNU_07G009010, scaffold002739G000010 ... scaffold009168G000010, scaffold009168G000020, scaffold013376G000010
Arecaceae	Phoenix dactylifera	4	gene-LOC103695548, gene-LOC103696220, gene-LOC103707677 ... gene-LOC103722740
Asparagaceae	Asparagus officinalis	5	AsparagusV1_03.613.V1.1, AsparagusV1_06.39.V1.1 ... AsparagusV1_08.2950.V1.1, AsparagusV1_10.1880.V1.1, AsparagusV1_10.1881.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G28836, Ftri13G11884, Ftri3G21437
Brassicaceae	Arabidopsis thaliana	2	AT5G08560.1, AT5G43920.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10003179m.g.v1.0, Thhalv10013060m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g08740.v2.2, Sp2g26750.v2.2, Sp6g34330.v2.2
Brassicaceae	Brassica nigra	5	BniB02g052620.2N, BniB04g001790.2N, BniB04g017400.2N ... BniB06g011980.2N, BniB08g003910.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G2175, Ceq03G1989, Ceq06G2280
Casuarinaceae	Casuarina glauca	3	Cgl02G2252, Cgl03G2137, Cgl06G2390
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno11g11340
Dunaliellaceae	Dunaliella salina	1	Dusal.1069s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g03360
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-10267, nbisL1-mrna-2193, nbisL1-mrna-6802
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.1576, evm.TU.LG03.2506
Plantaginaceae	Plantago ovata	2	Pov_00001348, Pov_00024562
Plumbaginaceae	Limonium bicolor	3	Lb3G20752, Lb5G28636, Lb6G30403
Poaceae	Echinochloa crus-galli	6	AH01.1833, AH08.230, BH01.2128, BH08.214, CH01.2246 ... CH08.251
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0127160, gene-QOZ80_2BG0182650 ... gene-QOZ80_8AG0616230, gene-QOZ80_8BG0643740
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0040900.1, HORVU.MOREX.r3.5HG0440360.2 ... HORVU.MOREX.r3.7HG0702990.1
Poaceae	Lolium multiflorum	4	gene-QYE76_001411, gene-QYE76_011398, gene-QYE76_033585 ... gene-QYE76_033586
Poaceae	Oryza coarctata	4	Oco03G008170, Oco04G008570, Oco19G005600, Oco20G005520
Poaceae	Oryza sativa	2	LOC_Os02g19210.1, LOC_Os10g32770.2
Poaceae	Paspalum vaginatum	2	gene-BS78_01G211600, gene-BS78_07G032000
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0402545, Pt_Chr0502527, Pt_Chr0704050, Pt_Chr0705494
Poaceae	Sporobolus alterniflorus	8	Chr06G013250, Chr09G010480, Chr0G025840, Chr0G029730 ... Chr16G001050, Chr17G001030, Chr20G013170, Chr29G012160
Poaceae	Thinopyrum elongatum	3	Tel1E01G275500, Tel5E01G152900, Tel7E01G535200
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG022320, gene_TRIDC1BG027020 ... gene_TRIDC5AG011420, gene_TRIDC5BG013370, gene_TRIDC7AG043360, gene_TRIDC7BG034630
Poaceae	Triticum aestivum	9	TraesCS1A02G146900.1, TraesCS1B02G164700.1 ... TraesCS1D02G145000.1, TraesCS5A02G074900.1, TraesCS5B02G081300.1, TraesCS5D02G088400.1, TraesCS7A02G311000.1, TraesCS7B02G210600.1, TraesCS7D02G307300.1
Poaceae	Zea mays	3	Zm00001eb046310_P001, Zm00001eb173190_P001 ... Zm00001eb261740_P004
Poaceae	Zoysia japonica	3	nbis-gene-19262, nbis-gene-39178, nbis-gene-41486
Poaceae	Zoysia macrostachya	3	Zma_g16159, Zma_g22416, Zma_g23559
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.510, evm.TU.LG03.2384, evm.TU.LG03.2385 ... evm.TU.LG04.256, evm.TU.LG17.1428, evm.TU.LG17.1430
Posidoniaceae	Posidonia oceanica	2	gene.Posoc08g07110, gene.Posoc08g08590
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_15_RagTag.6, evm.TU.Scaffold_17_RagTag.1002 ... evm.TU.Scaffold_17_RagTag.1003, evm.TU.Scaffold_5_RagTag.1161
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-11632, nbisL1-mrna-23725, nbisL1-mrna-23726 ... nbisL1-mrna-26291
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-11078, nbisL1-mrna-12120, nbisL1-mrna-6119
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-10237, nbisL1-mrna-17363, nbisL1-mrna-21879 ... nbisL1-mrna-21880
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000001l.7, evm.TU.utg000006l.421 ... evm.TU.utg000013l.560
Rhizophoraceae	Kandelia obovata	3	Maker00004520, Maker00004641, Maker00014113
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-10956, nbisL1-mrna-11715, nbisL1-mrna-9875
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-19862, nbisL1-mrna-23068, nbisL1-mrna-23069 ... nbisL1-mrna-2916
Salicaceae	Populus euphratica	6	populus_peu05939, populus_peu15013, populus_peu19808 ... populus_peu26662, populus_peu26667, populus_peu32670
Solanaceae	Lycium barbarum	4	gene-LOC132610349, gene-LOC132618795, gene-LOC132636700 ... gene-LOC132640864
Solanaceae	Solanum chilense	4	SOLCI001770700, SOLCI002039300, SOLCI003769700 ... SOLCI006669800
Solanaceae	Solanum pennellii	4	gene-LOC107005623, gene-LOC107020475, gene-LOC107025686 ... gene-LOC107029499
Tamaricaceae	Reaumuria soongarica	3	STRG.2139_chr01_+, STRG.8197_chr05_-, gene_1632
Tamaricaceae	Tamarix chinensis	3	TC01G0524, TC01G2384, TC03G1387
Zosteraceae	Zostera marina	1	Zosma06g11670.v3.1