halophFGD

Basic Information

Locus ID: Ag1G01680

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: RdRP

Description: Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	193829079	193838126	+	Ag1G01680

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.73	126,108.58 Da	36.28	85.49	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF05183	RNA dependent RNA polymerase	363	929	4.0E-188	IPR007855

Gene Ontology

Molecular Function:

GO:0003968 (RNA-directed RNA polymerase activity)

KEGG Pathway

KO Term:

K11699 (RNA-dependent RNA polymerase [EC:2.7.7.48])

Best hit

Source	Best Hit ID	Description
TAIR	AT1G14790.1	RNA-dependent RNA polymerase 1. Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie, et al. (2004). Involved in the production of Cucumber Mosaic Virus siRNAs.
RefSeq	XP_017226588.1	PREDICTED: probable RNA-dependent RNA polymerase 1 [Daucus carota subsp. sativus]
Swiss-Prot	Q9LQV2	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1
TrEMBL	A0A175YGB4	RNA-dependent RNA polymerase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030283 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	6.594217	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	5.693384	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	5.55245	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	5.227285	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	4.775683	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	2.412075	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	3.299124	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.814751	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	61.815464	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	54.963894	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	60.579731	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	45.972534	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	44.350616	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	35.291225	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	12.330315	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	13.877527	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	13.259356	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	39.663151	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	16.079607	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	86.436302	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	75.954887	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	36.771648	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	60.100864	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	39.047165	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	52.620567	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	22.635483	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	20.654421	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	18.319332	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	14.952675	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.630873		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	2.004887		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	2.279881		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	17.369129		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	20.430803		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	19.691628		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	17.198402		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	13.171363		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	16.171146		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	27.993753	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	53.549801	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	19.162294	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	54.18005	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	43.645233	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	43.483784	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	62.513496	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	66.375954	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	108.092651	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	41.084648	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	63.663368	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	61.948105	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg18718, jg34838, jg34840, jg34842, jg34843, jg521
Aizoaceae	Mesembryanthemum crystallinum	2	gene_13679, gene_17212
Amaranthaceae	Atriplex hortensis	2	Ah000659, Ah032543
Amaranthaceae	Beta vulgaris	2	BVRB_2g040860, BVRB_5g116660
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg29895, Sbi_jg30496, Sbi_jg43359, Sbi_jg58752
Amaranthaceae	Salicornia europaea	2	Seu_jg18532, Seu_jg28627
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00004294, GOSA_00004295, GOSA_00014974
Amaranthaceae	Suaeda glauca	4	Sgl55261, Sgl60525, Sgl66335, Sgl70669
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000007118, gene:ENSEOMG00000014518 ... gene:ENSEOMG00000018730, gene:ENSEOMG00000020620, gene:ENSEOMG00000022707, gene:ENSEOMG00000050947
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.2AG0003430, CQ.Regalona.r1.2BG0007400 ... CQ.Regalona.r1.5AG0022640
Anacardiaceae	Pistacia vera	15	pistato.v30138910, pistato.v30180200, pistato.v30180230 ... pistato.v30180240, pistato.v30188180, pistato.v30188310, pistato.v30205900, pistato.v30217180, pistato.v30218510, pistato.v30218520, pistato.v30218560, pistato.v30218570, pistato.v30218620, pistato.v30218640, pistato.v30218650
Apiaceae	Apium graveolens	2	Ag10G00152, Ag1G01680
Arecaceae	Cocos nucifera	2	COCNU_01G009170, scaffold001835G000010
Arecaceae	Phoenix dactylifera	3	gene-LOC103700847, gene-LOC103723736, gene-LOC120111660
Asparagaceae	Asparagus officinalis	2	AsparagusV1_05.2322.V1.1, AsparagusV1_06.1597.V1.1
Asteraceae	Flaveria trinervia	2	Ftri1G19446, Ftri9G07054
Brassicaceae	Arabidopsis thaliana	2	AT1G14790.1, AT4G11130.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10006629m.g.v1.0, Thhalv10028370m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g13230.v2.2, Sp6g06280.v2.2
Brassicaceae	Brassica nigra	2	BniB06g040120.2N, BniB08g050910.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G1894, Ceq09G0770
Casuarinaceae	Casuarina glauca	3	Cgl04G2079, Cgl09G0831, Cgl09G0832
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno06g04770, gene.Cymno11g08740
Dunaliellaceae	Dunaliella salina	1	Dusal.0696s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate05g23460, gene.Thate08g04430
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-2300
Nitrariaceae	Nitraria sibirica	8	evm.TU.Contig4.15, evm.TU.Contig4.16, evm.TU.LG01.2981 ... evm.TU.LG01.2990, evm.TU.LG03.1222, evm.TU.LG03.1223, evm.TU.LG06.1327, evm.TU.LG10.788
Plantaginaceae	Plantago ovata	5	Pov_00027282, Pov_00027285, Pov_00027286, Pov_00027290 ... Pov_00032410
Plumbaginaceae	Limonium bicolor	7	Lb1G02106, Lb1G02107, Lb1G02108, Lb1G02111, Lb2G11417 ... Lb4G24237, Lb4G24238
Poaceae	Echinochloa crus-galli	12	AH07.3385, AH07.3387, AH09.1281, BH07.3155, BH07.3219 ... BH07.3220, BH09.1392, CH07.3216, CH07.3271, CH07.3272, CH07.3273, CH09.1501
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_2AG0144860, gene-QOZ80_2BG0200360 ... gene-QOZ80_4AG0313310, gene-QOZ80_4AG0314340, gene-QOZ80_4BG0345500
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.2HG0174030.1, HORVU.MOREX.r3.6HG0613430.1 ... HORVU.MOREX.r3.4HG0382630.1.CDS1, HORVU.MOREX.r3.6HG0613450.1
Poaceae	Lolium multiflorum	4	gene-QYE76_006354, gene-QYE76_024975, gene-QYE76_024980 ... gene-QYE76_044525
Poaceae	Oryza coarctata	4	Oco03G021030, Oco04G021680, Oco07G008000, Oco08G007910
Poaceae	Oryza sativa	2	LOC_Os02g50330.1, LOC_Os04g39160.1
Poaceae	Paspalum vaginatum	2	gene-BS78_04G270300, gene-BS78_06G125900
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0203399, Pt_Chr0302412, Pt_Chr0305333, Pt_Chr0305649
Poaceae	Sporobolus alterniflorus	2	Chr06G002770, Chr23G011220
Poaceae	Thinopyrum elongatum	7	Tel2E01G574400, Tel2E01G574700, Tel4E01G332000 ... Tel4E01G332200, Tel4E01G400700, Tel6E01G539900, Tel6E01G540000
Poaceae	Triticum dicoccoides	10	gene_TRIDC2AG046470, gene_TRIDC2AG048080 ... gene_TRIDC2AG048100, gene_TRIDC2BG050540, gene_TRIDC4AG017300, gene_TRIDC4BG032410, gene_TRIDC6AG045290, gene_TRIDC6AG045300, gene_TRIDC6BG052920, gene_TRIDC6BG052930
Poaceae	Triticum aestivum	18	TraesCS2A02G319600.1.cds1, TraesCS2A02G333900.1 ... TraesCS2A02G334100.1, TraesCS2B02G347100.2, TraesCS2B02G347300.1, TraesCS2D02G328100.1, TraesCS2D02G328300.2, TraesCS4A02G119800.2, TraesCS4B02G231900.1, TraesCS4D02G186200.1, TraesCS4D02G233200.1, TraesCS6A02G298900.1, TraesCS6A02G299000.1, TraesCS6B02G328300.1, TraesCS6B02G328400.1, TraesCS6B02G328500.2, TraesCS6D02G278600.1, TraesCS6D02G278700.1
Poaceae	Zea mays	2	Zm00001eb080370_P001, Zm00001eb253860_P001
Poaceae	Zoysia japonica	1	nbis-gene-8789
Poaceae	Zoysia macrostachya	2	Zma_g14382, Zma_g21423
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.912, evm.TU.LG09.1061, evm.TU.LG10.331 ... evm.TU.LG17.330
Posidoniaceae	Posidonia oceanica	2	gene.Posoc03g18410, gene.Posoc08g01150
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.53875.1, evm.TU.53875.5, evm.TU.Scaffold_4_RagTag.493 ... evm.TU.Scaffold_17_RagTag.756
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-23462, nbisL1-mrna-26483, nbisL1-mrna-26485 ... nbisL1-mrna-26486, nbisL1-mrna-28871, nbisL1-mrna-3479
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-19480, nbisL1-mrna-2778, nbisL1-mrna-3504
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-17571, nbisL1-mrna-17572, nbisL1-mrna-1840 ... nbisL1-mrna-1841, nbisL1-mrna-20059
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000001l.158, evm.TU.utg000008l.316 ... evm.TU.utg000013l.411
Rhizophoraceae	Kandelia obovata	3	Maker00001212, Maker00004503, Maker00004683
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-10805, nbisL1-mrna-11562, nbisL1-mrna-14590
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-14288, nbisL1-mrna-1480, nbisL1-mrna-2692 ... nbisL1-mrna-2693, nbisL1-mrna-2695
Salicaceae	Populus euphratica	5	populus_peu07224, populus_peu07225, populus_peu07226 ... populus_peu21223, populus_peu28611
Solanaceae	Lycium barbarum	4	gene-LOC132616486, gene-LOC132619057, gene-LOC132620038 ... gene-LOC132632767
Solanaceae	Solanum chilense	1	SOLCI003577900
Solanaceae	Solanum pennellii	2	gene-LOC107015037, gene-LOC107020639
Tamaricaceae	Reaumuria soongarica	3	STRG.20101_chr07_+, STRG.20103_chr07_+, gene_11226
Tamaricaceae	Tamarix chinensis	3	TC04G0075, TC04G0076, TC08G2407
Zosteraceae	Zostera marina	2	Zosma01g09830.v3.1, Zosma04g02650.v3.1