Basic Information
Locus ID:
Ag1G01639
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the Nudix hydrolase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 192241159 | 192244169 | - | Ag1G01639 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.87 | 19,875.14 Da | 46.11 | 75.63 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03671 | Ap4A_hydrolase_plant_like | 7 | 156 | 4.93496E-71 | IPR022927 |
| Pfam | PF00293 | NUDIX domain | 8 | 151 | 2.7E-26 | IPR000086 |
| SUPERFAMILY | SSF55811 | Nudix | 7 | 159 | 9.48E-31 | IPR015797 |
| Gene3D | G3DSA:3.90.79.10 | Nucleoside Triphosphate Pyrophosphohydrolase | 1 | 160 | 7.2E-49 | - |
| ProSiteProfiles | PS51462 | Nudix hydrolase domain profile. | 7 | 154 | 21.120903 | IPR000086 |
| ProSitePatterns | PS00893 | Nudix box signature. | 40 | 61 | - | IPR020084 |
| PRINTS | PR00502 | NUDIX hydrolase family signature | 49 | 64 | 6.3E-6 | IPR020476 |
| PRINTS | PR00502 | NUDIX hydrolase family signature | 35 | 49 | 6.3E-6 | IPR020476 |
| Hamap | MF_00298 | RNA pyrophosphohydrolase [rppH]. | 2 | 161 | 31.419739 | IPR022927 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30110.1 | nudix hydrolase homolog 25. | 0 |
| RefSeq | XP_017231040.1 | PREDICTED: nudix hydrolase 25-like [Daucus carota subsp. sativus] | 0 |
| Q9C6Z2 | Nudix hydrolase 25 OS=Arabidopsis thaliana OX=3702 GN=NUDT25 PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YGJ6 | Nudix hydrolase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030224 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 21.000292 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 23.194889 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 34.817261 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 33.738842 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 31.6285 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 20.628864 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 24.120235 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.704861 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 15.526182 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 14.839169 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 12.56453 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 12.245063 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 16.870962 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 14.916709 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.870254 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.985174 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 17.895788 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 16.141891 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.739557 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 20.558218 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 16.363087 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 204.790695 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 176.423355 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 132.461639 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 123.722832 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 59.617573 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 46.486771 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 69.214088 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 80.027702 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.782552 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.648847 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.142086 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 5.576811 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 12.285096 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 6.205246 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.387723 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.684738 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.02869 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.47822 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.336206 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.188971 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 43.057953 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 15.3705 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 13.474115 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 16.799725 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 62.855389 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 29.797081 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 15.018179 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.366538 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 9.956735 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg2857, jg35019, jg9098 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_11416, gene_18602 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah005148, Ah006938, Ah025308 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g143480 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12929, Sbi_jg12930, Sbi_jg343, Sbi_jg52934 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg4280, Seu_jg8925 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022109 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl21200, Sgl25460, Sgl26538, Sgl30616, Sgl32626, Sgl37916 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000000190, gene:ENSEOMG00000003171 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.4AG0012360, CQ.Regalona.r1.4BG0015290 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30169320, pistato.v30217270, pistato.v30276550 |
| Apiaceae | Apium graveolens | 4 | Ag1G01639, Ag2G00768, Ag2G01982, Ag6G00563 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G017730 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721004 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.735.V1.1, AsparagusV1_10.1684.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G28784, Ftri5G04466 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G30110.1, AT3G10620.1, AT5G06340.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10008899m.g.v1.0, Thhalv10014104m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g25970.v2.2, Sp3g08930.v2.2, Sp6g36510.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g054400.2N, BniB02g054450.2N, BniB03g016290.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq08G1650, Ceq09G0890 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G1691, Cgl09G0962 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g03650 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0054s00027.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g10300 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7375 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG01.604, evm.TU.LG02.1363, evm.TU.LG03.1373 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00021537, Pov_00028888 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G01448, Lb1G05699 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2774, BH09.3011, CH09.3177 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0298730, gene-QOZ80_4BG0329430 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0213640.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_000865, gene-QYE76_000948 |
| Poaceae | Oryza coarctata | 2 | Oco07G019780, Oco08G019060 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g58900.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G291100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0307082 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G000490, Chr25G000370, Chr26G018730, Chr30G000600 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G978500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG078980, gene_TRIDC2BG087250 |
| Poaceae | Triticum aestivum | 3 | TraesCS2B02G602100.1, TraesCS2D02G595100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb434200_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6246 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22270 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.1912, evm.TU.LG06.1352, evm.TU.LG14.213 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g16550 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_17_RagTag.817, evm.TU.Scaffold_1_RagTag.1065 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-23529, nbisL1-mrna-3893, nbisL1-mrna-6541 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-14963, nbisL1-mrna-17293, nbisL1-mrna-18097 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-18764, nbisL1-mrna-21143, nbisL1-mrna-22024 ... |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000009l.480, evm.TU.utg000013l.459 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00004496, Maker00005304, Maker00016546 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-10852, nbisL1-mrna-12384, nbisL1-mrna-7577 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-13517, nbisL1-mrna-14223, nbisL1-mrna-5490 |
| Salicaceae | Populus euphratica | 8 | populus_peu06069, populus_peu07167, populus_peu12418 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132615242, gene-LOC132642084 |
| Solanaceae | Solanum chilense | 1 | SOLCI006719900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107003212, gene-LOC107018912 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.32419_chr09_-, STRG.9264_chr03_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G1073, TC11G1036 |
| Zosteraceae | Zostera marina | 1 | Zosma02g06960.v3.1 |