Basic Information
Locus ID:
Ag1G01604
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Sec-independent protein translocase protein TATC
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 191711382 | 191716974 | + | Ag1G01604 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 38,245.64 Da | 33.74 | 110.06 | 0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00902 | Sec-independent protein translocase protein (TatC) | 121 | 329 | 3.6E-61 | IPR002033 |
| TIGRFAM | TIGR00945 | tatC: twin arginine-targeting protein translocase TatC | 119 | 334 | 4.0E-80 | IPR002033 |
| ProSitePatterns | PS01218 | TatC family signature. | 261 | 280 | - | IPR019820 |
| PRINTS | PR01840 | Bacterial Sec-independent translocation TatC protein family signature | 192 | 210 | 1.8E-42 | IPR002033 |
| PRINTS | PR01840 | Bacterial Sec-independent translocation TatC protein family signature | 261 | 289 | 1.8E-42 | IPR002033 |
| PRINTS | PR01840 | Bacterial Sec-independent translocation TatC protein family signature | 118 | 145 | 1.8E-42 | IPR002033 |
| PRINTS | PR01840 | Bacterial Sec-independent translocation TatC protein family signature | 210 | 236 | 1.8E-42 | IPR002033 |
| Hamap | MF_00902 | Sec-independent protein translocase protein TatC [tatC]. | 114 | 346 | 15.993378 | IPR002033 |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01110.1 | Sec-independent periplasmic protein translocase. mutant is Albino and pale green; Chloroplast Protein Translocation (tatC). Core subunit of the chloroplast Tat translocase. Integral chloroplast thylakoid membrane protein. | 0 |
| RefSeq | XP_017224091.1 | PREDICTED: sec-independent protein translocase protein TATC, chloroplastic-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q94G17 | Sec-independent protein translocase protein TATC, chloroplastic OS=Pisum sativum OX=3888 GN=TATC PE=1 SV=1 | 0 | |
| TrEMBL | A0A251SC26 | Putative sec-independent periplasmic protein translocase TatC OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr15g0477711 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 7.510143 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 11.46713 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.917052 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.363019 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 8.616418 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 14.486436 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 12.286369 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 12.226939 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 22.116556 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 20.3363 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 18.81673 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 16.106512 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 15.091659 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 20.472738 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.933393 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 11.881351 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.841733 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 18.518604 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 17.8608 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 21.179184 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 22.501024 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 13.17453 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 11.185983 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 16.696789 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 12.085883 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 21.192673 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 21.507755 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 19.35261 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 18.562576 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 34.326626 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 26.829645 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 22.795616 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 45.610413 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 28.292765 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 48.302643 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 47.793621 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 27.563238 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 41.186684 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 18.410872 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 27.04847 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 30.548458 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 31.211475 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 18.415464 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 12.542027 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 12.476612 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 39.402699 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 11.336977 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 14.73964 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.715058 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.583894 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg5212, jg7294, jg9115 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4090 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025502 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g143080 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg12881, Sbi_jg36217, Sbi_jg52990 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg4311, Seu_jg8868 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00021462, GOSA_00022145, GOSA_00024757 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl25377, Sgl30556, Sgl33047, Sgl38283 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000512, gene:ENSEOMG00000002990 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0013460, CQ.Regalona.r1.6BG0014020 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30215990 |
| Apiaceae | Apium graveolens | 2 | Ag1G01604, Ag6G00536 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G005480 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103705632, gene-LOC103715160 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3194.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G08938, Ftri13G24304, Ftri18G24265 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G01110.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000946m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g12580.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g064510.2N, BniB04g009920.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G2068 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G2268 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g14340, gene.Cymno11g02270 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0450s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g00150 |
| Nitrariaceae | Nitraria sibirica | 4 | evm.TU.Contig10.11, evm.TU.Contig10.5, evm.TU.LG03.1469 ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019106 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G13258, Lb2G13263 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.4263, BH02.4295, BH04.1859, CH02.4335 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0018590, gene-QOZ80_1BG0068580 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0261530.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_046000 |
| Poaceae | Oryza coarctata | 2 | Oco01G010820, Oco02G011740 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g31680.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G226500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301535, Pt_Chr0301555 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G012930, Chr14G009100, Chr21G009270 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G332600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG027340, gene_TRIDC3BG032550 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G193600.1, TraesCS3B02G224200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb009240_P002, Zm00001eb399680_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21630 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG04.2746, evm.TU.LG08.404, evm.TU.LG08.405 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g04140, gene.Posoc04g21740 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.141 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9195 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17475 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.87 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004794 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11637 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2793 |
| Salicaceae | Populus euphratica | 1 | populus_peu21099 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641665 |
| Solanaceae | Solanum chilense | 1 | SOLCI005484900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020382 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1584 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1351 |
| Zosteraceae | Zostera marina | 2 | Zosma03g01760.v3.1, Zosma04g19260.v3.1 |