halophFGD

Basic Information

Locus ID: Ag1G01581

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Leucine-rich repeat receptor-like protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	190865932	190867541	-	Ag1G01581

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.13	28,621.86 Da	27.46	101.35	0.26

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF52058	L domain-like	7	127	3.4E-25	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	2	152	2.8E-36	IPR032675

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G68400.1	leucine-rich repeat transmembrane protein kinase family protein.
RefSeq	XP_017223898.1	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Daucus carota subsp. sativus]
Swiss-Prot	Q9M9C5	Probable leucine-rich repeat receptor-like protein kinase At1g68400 OS=Arabidopsis thaliana OX=3702 GN=At1g68400 PE=1 SV=1
TrEMBL	A0A175YG09	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030175 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.892877	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	2.541947	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	2.202718	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	3.604925	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	3.533089	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.789434	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.707559	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.555686	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	75.887413	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	78.884689	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	89.854843	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	65.600349	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	47.803146	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	36.535244	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.474942	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	4.300613	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	6.195734	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	5.43667	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	5.545982	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	2.843358	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	5.484218	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	13.77126	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	19.697754	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	21.108986	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	20.094706	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	16.398325	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	12.638288	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	10.930631	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	14.361334	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.15407		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.589767		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.249435		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.340787		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	16.109156		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.102457		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.174789		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.171029		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	20.064997	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.375237	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.391672	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.757285	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.250219	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	1.136713	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	20.34753	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	20.509634	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	18.62203	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg34958, jg5248
Aizoaceae	Mesembryanthemum crystallinum	1	gene_4043
Amaranthaceae	Atriplex hortensis	1	Ah025656
Amaranthaceae	Beta vulgaris	1	BVRB_6g142530
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg12847, Sbi_jg53034
Amaranthaceae	Salicornia europaea	1	Seu_jg8828
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00026419, GOSA_00026420
Amaranthaceae	Suaeda glauca	2	Sgl32824, Sgl38106
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000000289, gene:ENSEOMG00000024624
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.6AG0013930, CQ.Regalona.r1.6BG0014720
Anacardiaceae	Pistacia vera	1	pistato.v30214240
Apiaceae	Apium graveolens	1	Ag1G01581
Arecaceae	Cocos nucifera	2	COCNU_02G006210, COCNU_03G008790
Arecaceae	Phoenix dactylifera	2	gene-LOC103718828, gene-LOC103723274
Asteraceae	Flaveria trinervia	2	Ftri13G01231, Ftri5G01166
Brassicaceae	Arabidopsis thaliana	1	AT1G68400.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10018235m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp5g23460.v2.2
Brassicaceae	Brassica nigra	1	BniB05g064990.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq09G2012
Casuarinaceae	Casuarina glauca	1	Cgl09G2204
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno11g01310
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate01g27760
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG03.1519
Plantaginaceae	Plantago ovata	1	Pov_00019193
Plumbaginaceae	Limonium bicolor	3	Lb4G22785, Lb4G22790, Lb4G22791
Poaceae	Echinochloa crus-galli	1	CH02.875
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_1AG0008600, gene-QOZ80_1BG0057340
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.3HG0225880.1
Poaceae	Lolium multiflorum	2	gene-QYE76_037746, gene-QYE76_048930
Poaceae	Oryza coarctata	2	Oco01G001360, Oco02G001370
Poaceae	Oryza sativa	1	LOC_Os01g04230.1
Poaceae	Paspalum vaginatum	1	gene-BS78_03G075200
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0205489, Pt_Chr0205555, Pt_Chr0205642
Poaceae	Sporobolus alterniflorus	3	Chr02G024070, Chr03G003730, Chr05G002030
Poaceae	Thinopyrum elongatum	1	Tel3E01G083800
Poaceae	Triticum dicoccoides	2	gene_TRIDC3AG004050, gene_TRIDC3BG006250
Poaceae	Triticum aestivum	3	TraesCS3A02G037200.1, TraesCS3B02G046700.1 ... TraesCS3D02G042500.1
Poaceae	Zea mays	1	Zm00001eb125150_P001
Poaceae	Zoysia japonica	2	nbis-gene-57085, nbis-gene-7039
Poaceae	Zoysia macrostachya	1	Zma_g9918
Portulacaceae	Portulaca oleracea	2	evm.TU.LG13.703, evm.TU.LG21.390
Posidoniaceae	Posidonia oceanica	1	gene.Posoc04g02180
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_15_RagTag.53
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-26358
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-13011
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-17399
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000001l.35
Rhizophoraceae	Kandelia obovata	1	Maker00004668
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-11688
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-2875
Salicaceae	Populus euphratica	1	populus_peu21061
Solanaceae	Lycium barbarum	1	gene-LOC132641744
Solanaceae	Solanum pennellii	1	gene-LOC107018471
Tamaricaceae	Reaumuria soongarica	1	gene_3603
Tamaricaceae	Tamarix chinensis	1	TC11G1088
Zosteraceae	Zostera marina	2	Zosma03g01130.v3.1, Zosma06g06600.v3.1