Basic Information
Locus ID:
Ag1G01575
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 190760901 | 190762861 | - | Ag1G01575 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.28 | 23,946.75 Da | 53.53 | 64.98 | -0.69 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68440.1 | 0 | |
| RefSeq | XP_017225229.1 | PREDICTED: uncharacterized protein LOC108201460 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A175YGV6 | Transmembrane protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030166 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 17.745411 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 20.353117 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 29.99633 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 24.796801 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 30.600376 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 72.768616 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 45.737576 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 82.667259 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 49.363129 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 65.428787 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 64.036598 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 33.706215 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 43.561565 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 33.079159 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 41.963745 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 57.87355 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 41.534424 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 45.60812 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 45.595451 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 78.685143 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 77.423088 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 22.936352 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 24.531982 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 26.674236 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 27.648979 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 33.388321 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 24.705692 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 25.166832 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 32.953613 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.720455 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.059078 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.212199 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 33.846848 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 35.427929 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 44.263309 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 8.384569 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.507873 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 6.675097 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 27.232748 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.892153 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.429843 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 134.622192 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 120.336372 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 12.85869 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 26.475863 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 122.224098 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 16.76236 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 85.539833 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 72.194221 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 92.34388 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg34948, jg9149 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4027 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025751 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g141430 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13893, Sbi_jg52043 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9807 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022541 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl33182, Sgl38369, Sgl38420 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001687, gene:ENSEOMG00000001790 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0014320, CQ.Regalona.r1.6BG0015060 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30213180 |
| Apiaceae | Apium graveolens | 2 | Ag1G01575, Ag8G02021 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G006060 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.831.V1.1, AsparagusV1_Unassigned.697.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G05080, Ftri11G29823, Ftri5G12426 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G25400.1, AT1G68440.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008406m.g.v1.0, Thhalv10018918m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g22820.v2.2, Sp5g23510.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g032060.2N, BniB03g045750.2N, BniB05g065080.2N |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1547 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019210 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.687, evm.TU.LG21.374 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_15_RagTag.67, evm.TU.Scaffold_17_RagTag.901 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-23623, nbisL1-mrna-26373 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2927, nbisL1-mrna-8307 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-17412, nbisL1-mrna-21960 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000001l.23, add.evm.TU.utg000013l.187 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004684 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-21078, nbisL1-mrna-21366 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-23158, nbisL1-mrna-2861 |
| Salicaceae | Populus euphratica | 2 | populus_peu07077, populus_peu21042 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641761 |
| Solanaceae | Solanum chilense | 2 | SOLCI001517200, SOLCI004023400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107017873, gene-LOC107018583 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G1290, TC11G1037 |