Basic Information
Locus ID:
Ag1G01548
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Transmembrane Fragile-X-F protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 189880108 | 189886715 | + | Ag1G01548 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.69 | 34,026.79 Da | 35.97 | 122.69 | 0.56 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68820.1 | Transmembrane Fragile-X-F-associated protein. | 0 |
| RefSeq | XP_017226466.1 | PREDICTED: uncharacterized protein LOC108202534 isoform X3 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A175YFS5 | DUF4220 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030085 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 6.55894 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.863891 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.292032 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 6.643056 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.365351 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.931064 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.209273 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.220992 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 13.408417 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 14.19933 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 16.635185 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 12.90978 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 12.241196 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.187282 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.446528 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.816878 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.672316 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 9.24472 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.235986 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.573093 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 8.728489 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 14.658573 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 14.527699 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 11.653839 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 11.149002 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.669378 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.215302 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.891239 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 9.104379 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.755098 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.331495 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.526805 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.372986 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.432643 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.591611 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.620491 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.62974 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.997196 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.961391 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.117038 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.21301 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.726373 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 13.804374 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 28.485258 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 36.442669 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 5.76471 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 31.890261 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 16.804785 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 21.885078 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 23.15365 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg25663, jg34903, jg34904, jg9188 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19745 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001445 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30896, Sbi_jg58382 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28260 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004839 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl54925, Sgl60181, Sgl60182 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006978, gene:ENSEOMG00000021305 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0018410, CQ.Regalona.r1.5BG0019580 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30146090, pistato.v30225770 |
| Apiaceae | Apium graveolens | 2 | Ag1G01548, Ag3G00938 |
| Arecaceae | Cocos nucifera | 4 | COCNU_03G008410, scaffold019532G000010 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701851, gene-LOC103721407 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1423.V1.1, AsparagusV1_07.3685.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G29246, Ftri18G01929 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G18470.1, AT1G68820.1, AT1G73950.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10007552m.g.v1.0, Thhalv10018496m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g16410.v2.2, Sp5g23930.v2.2, Sp5g29150.v2.2 |
| Brassicaceae | Brassica nigra | 7 | BniB03g007600.2N, BniB03g028040.2N, BniB03g046190.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G2029, Ceq03G2391 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G2168, Cgl03G2528 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g02800 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g04310 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.499, evm.TU.LG10.425 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00009030, Pov_00019336 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb7G34016, Lb7G34017 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.897, AH03.1874, BH01.1025, BH03.2041, CH01.1076 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0219520, gene-QOZ80_3BG0264760 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0336680.1, HORVU.MOREX.r3.5HG0479700.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_005102, gene-QYE76_017385, gene-QYE76_027240 |
| Poaceae | Oryza coarctata | 4 | Oco05G021330, Oco06G022130, Oco17G004570, Oco18G004630 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g49900.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G109900, gene-BS78_02G179700 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0104784, Pt_Chr0502657, Pt_Chr0702227 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G007340, Chr04G026740, Chr07G025730, Chr12G030140 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G077800, Tel5E01G343700 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC4AG042240, gene_TRIDC4BG006730 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G271200.1, TraesCS4B02G042900.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb054460_P001, Zm00001eb216620_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-14783, nbis-gene-15884, nbis-gene-20012 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2978, Zma_g32433 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2715, evm.TU.LG02.131, evm.TU.LG09.1368 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g31360, gene.Posoc08g00170 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_17_RagTag.944, evm.TU.Scaffold_4_RagTag.784 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-23672, nbisL1-mrna-28576 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-21419, nbisL1-mrna-984 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-1593, nbisL1-mrna-21920 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.509, evm.TU.utg000013l.530 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001342, Maker00004468 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10923, nbisL1-mrna-14396 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19275, nbisL1-mrna-23116 |
| Salicaceae | Populus euphratica | 5 | populus_peu07021, populus_peu09320, populus_peu20980 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132633301, gene-LOC132641830 |
| Solanaceae | Solanum chilense | 2 | SOLCI002192600, SOLCI006254700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014974, gene-LOC107018509 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15962 |
| Tamaricaceae | Tamarix chinensis | 2 | TC09G1363, TC09G1544 |
| Zosteraceae | Zostera marina | 2 | Zosma03g35440.v3.1, Zosma06g09610.v3.1 |