Basic Information
Locus ID:
Ag1G01534
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 189206304 | 189208791 | + | Ag1G01534 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.93 | 63,102.32 Da | 42.12 | 96.96 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 69 | 5.7E-6 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 396 | 456 | 1.7E-7 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 57 | 370 | 8.16E-49 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 341 | 467 | 1.7E-22 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 376 | 472 | 1.0E-23 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 251 | 375 | 6.6E-29 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 147 | 5.6E-18 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 148 | 250 | 7.8E-28 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 394 | 417 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 177 | 201 | 58.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 225 | 248 | 260.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 418 | 442 | 34.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 129 | 153 | 13.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 250 | 276 | 350.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 396 | 418 | 8.050786 | IPR001611 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 19 | 6.0 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02220.1 | phytosulfokin receptor 1. Encodes a protein interacting with phytosulfokine, a five amino acid sulfated peptide (YIYTQ). | 0 |
| RefSeq | XP_017225202.1 | PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Daucus carota subsp. sativus] | 0 |
| Q9ZVR7 | Phytosulfokine receptor 1 OS=Arabidopsis thaliana OX=3702 GN=PSKR1 PE=1 SV=4 | 0 | |
| TrEMBL | A0A175YI69 | LRRNT_2 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030101 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.223579 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.832218 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.461083 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.238433 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.659099 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.454675 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.502467 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.378855 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.349613 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.39428 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.568317 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.15354 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.685943 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.281487 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.112489 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.108911 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.035187 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.912161 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.147737 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.287527 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.873206 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.363322 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.543549 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.216558 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.474987 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.183666 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.056515 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.777264 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.707047 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.165189 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.288087 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.099341 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.530683 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.136448 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.177325 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.885507 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.76139 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.308035 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.222597 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.506384 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.12043 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.504708 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.395675 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.687039 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18890 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021381 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056200 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000032386 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3BG0017740 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30085600, pistato.v30085610, pistato.v30085720 ... |
| Apiaceae | Apium graveolens | 5 | Ag1G01409, Ag1G01533, Ag1G01534, Ag3G00393, Ag9G01364 |
| Arecaceae | Cocos nucifera | 1 | scaffold001583G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718375 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G03062, Ftri16G18592 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G04220.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10027707m.g.v1.0, Thhalv10027711m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g02900.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g018820.2N, BniB04g018840.2N, BniB07g033940.2N |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.2115, evm.TU.LG15.1016 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.19 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10341 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20621 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17663 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.391 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002965 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24363 |
| Salicaceae | Populus euphratica | 1 | populus_peu04482 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607114 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8519 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1643 |