halophFGD

Basic Information

Locus ID: Ag1G01529

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: calcium-binding protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	189073579	189074061	+	Ag1G01529

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.35	17,776.90 Da	37.88	95.19	-0.26

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00051	EFh	87	148	1.97317E-17	IPR002048
Pfam	PF13499	EF-hand domain pair	11	73	1.8E-13	IPR002048
Pfam	PF13499	EF-hand domain pair	86	148	2.5E-15	IPR002048
SUPERFAMILY	SSF47473	EF-hand	2	148	3.3E-42	IPR011992
Gene3D	G3DSA:1.10.238.10	-	1	80	8.3E-21	-
Gene3D	G3DSA:1.10.238.10	-	81	159	3.4E-22	-
SMART	SM00054	efh_1	87	115	2.6E-4	IPR002048
SMART	SM00054	efh_1	123	151	3.7E-6	IPR002048
SMART	SM00054	efh_1	12	40	3.4E-4	IPR002048
SMART	SM00054	efh_1	48	76	1.5	IPR002048
ProSiteProfiles	PS50222	EF-hand calcium-binding domain profile.	119	154	12.337564	IPR002048
ProSiteProfiles	PS50222	EF-hand calcium-binding domain profile.	83	118	14.039183	IPR002048
ProSiteProfiles	PS50222	EF-hand calcium-binding domain profile.	8	43	15.545536	IPR002048
ProSiteProfiles	PS50222	EF-hand calcium-binding domain profile.	44	79	10.859108	IPR002048
ProSitePatterns	PS00018	EF-hand calcium-binding domain.	21	33	-	IPR018247
ProSitePatterns	PS00018	EF-hand calcium-binding domain.	96	108	-	IPR018247
ProSitePatterns	PS00018	EF-hand calcium-binding domain.	57	69	-	IPR018247
ProSitePatterns	PS00018	EF-hand calcium-binding domain.	132	144	-	IPR018247

Gene Ontology

Molecular Function:

GO:0005509 (calcium ion binding)

KEGG Pathway

KO Term:

K13448 (calcium-binding protein CML)

Pathway:

ko04626 (Plant-pathogen interaction) map04626 (Plant-pathogen interaction)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G25600.1	Calcium-binding EF-hand family protein.
RefSeq	XP_017227332.1	PREDICTED: probable calcium-binding protein CML16 [Daucus carota subsp. sativus]
Swiss-Prot	Q9LI84	Probable calcium-binding protein CML16 OS=Arabidopsis thaliana OX=3702 GN=CML16 PE=2 SV=2
TrEMBL	A0A175YFX1	Calcium-binding protein CML16 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030133 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.577541	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.09601	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.927076	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.384298	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.680676	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.356617	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.069418	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.570693	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.591382	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.29707	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.971112	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.800197	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.449371	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.436824	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.423524	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.273729	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.368881	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.277925		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.341971		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.170932		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.237947		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	33.863079		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.318774	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.415378	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.009808	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	17.441099	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	102.924774	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	89.991669	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg4982, jg5314, jg7201, jg7495
Aizoaceae	Mesembryanthemum crystallinum	2	gene_19737, gene_3444
Amaranthaceae	Atriplex hortensis	4	Ah001370, Ah018361, Ah026094, Ah026095
Amaranthaceae	Beta vulgaris	3	BVRB_3g049760, BVRB_3g065090, BVRB_6g140870
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg12795, Sbi_jg14831, Sbi_jg30921, Sbi_jg53096 ... Sbi_jg55608, Sbi_jg58355
Amaranthaceae	Salicornia europaea	3	Seu_jg25957, Seu_jg26166, Seu_jg8778
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00004820, GOSA_00017974, GOSA_00017975, GOSA_00026930
Amaranthaceae	Suaeda glauca	9	Sgl01080, Sgl06165, Sgl34081, Sgl34306, Sgl39708, Sgl54904 ... Sgl54905, Sgl60159, Sgl60160
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000002563, gene:ENSEOMG00000002741 ... gene:ENSEOMG00000003487, gene:ENSEOMG00000006445, gene:ENSEOMG00000021033, gene:ENSEOMG00000025609, gene:ENSEOMG00000026220, gene:ENSEOMG00000030675, gene:ENSEOMG00000044328
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.3AG0007420, CQ.Regalona.r1.3BG0007470 ... CQ.Regalona.r1.5AG0018680, CQ.Regalona.r1.5BG0019900, CQ.Regalona.r1.6BG0016490
Apiaceae	Apium graveolens	4	Ag1G01529, Ag5G02113, Ag6G00819, Ag7G00527
Arecaceae	Cocos nucifera	3	COCNU_10G002330, COCNU_14G005220, scaffold020587G000030
Arecaceae	Phoenix dactylifera	5	gene-LOC103696753, gene-LOC103714578, gene-LOC103715132 ... gene-LOC103715953, gene-LOC120110815
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.3626.V1.1, AsparagusV1_04.1194.V1.1 ... AsparagusV1_10.158.V1.1
Asteraceae	Flaveria trinervia	4	Ftri13G23436, Ftri18G17581, Ftri1G20496, FtriNA28860
Brassicaceae	Arabidopsis thaliana	4	AT1G18530.1, AT1G32250.1, AT3G03000.1, AT3G25600.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10005049m.g.v1.0, Thhalv10008984m.g.v1.0 ... Thhalv10009363m.g.v1.0, Thhalv10021666m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g16480.v2.2, Sp1g27930.v2.2, Sp2g14880.v2.2 ... Sp3g02060.v2.2
Brassicaceae	Brassica nigra	8	BniB01g004330.2N, BniB02g066270.2N, BniB03g028070.2N ... BniB03g035490.2N, BniB04g013780.2N, BniB04g033050.2N, BniB06g066780.2N, BniB07g060910.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq01G0274, Ceq03G2372, Ceq07G0505, Ceq09G1785
Casuarinaceae	Casuarina glauca	5	Cgl01G0269, Cgl03G2510, Cgl07G0528, Cgl09G0968, Cgl09G1959
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno09g07860
Dunaliellaceae	Dunaliella salina	1	Dusal.1010s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g06900, gene.Thate02g22450, gene.Thate09g04650
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-11586, nbisL1-mrna-1511
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.473, evm.TU.LG05.832, evm.TU.LG10.446
Plantaginaceae	Plantago ovata	3	Pov_00003032, Pov_00019373, Pov_00027400
Plumbaginaceae	Limonium bicolor	1	Lb1G00868
Poaceae	Echinochloa crus-galli	6	AH03.3094, BH01.3117, BH02.2353, BH05.1455, CH02.2528 ... CH05.1644
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_1AG0023620, gene-QOZ80_2AG0118150 ... gene-QOZ80_2BG0171870, gene-QOZ80_5AG0362090, gene-QOZ80_5BG0410300
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0053300.1.CDS1 ... HORVU.MOREX.r3.1HG0080710.1, HORVU.MOREX.r3.1HG0091390.1.CDS1, HORVU.MOREX.r3.3HG0270160.1.CDS1
Poaceae	Lolium multiflorum	6	gene-QYE76_013031, gene-QYE76_013069, gene-QYE76_015191 ... gene-QYE76_038992, gene-QYE76_053655, gene-QYE76_071923
Poaceae	Oryza coarctata	5	Oco01G010940, Oco01G014060, Oco02G011420, Oco06G022770 ... Oco09G017590
Poaceae	Oryza sativa	3	LOC_Os01g32120.1, LOC_Os01g41990.1, LOC_Os05g50180.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G274800, gene-BS78_03G187000 ... gene-BS78_09G246700
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0503386, Pt_Chr0503393, Pt_Chr0603245, Pt_Chr0605182
Poaceae	Sporobolus alterniflorus	7	Chr02G016040, Chr05G017800, Chr09G006070, Chr0G019460 ... Chr13G018810, Chr18G012680, Chr22G000570
Poaceae	Thinopyrum elongatum	3	Tel1E01G337200, Tel1E01G689000, Tel3E01G373400
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG029380, gene_TRIDC1AG061200 ... gene_TRIDC1BG034970, gene_TRIDC1BG070160, gene_TRIDC3AG032290, gene_TRIDC3BG036780
Poaceae	Triticum aestivum	8	TraesCS1A02G193700.1.cds1, TraesCS1A02G416100.1.cds1 ... TraesCS1B02G208700.1.cds1, TraesCS1B02G446400.1.cds1, TraesCS1D02G197600.1.cds1, TraesCS3A02G216300.1.cds1, TraesCS3B02G246100.1.cds1, TraesCS3D02G217900.1.cds1
Poaceae	Zea mays	4	Zm00001eb161480_P001, Zm00001eb202510_P001 ... Zm00001eb224870_P001, Zm00001eb296740_P001
Poaceae	Zoysia japonica	3	nbis-gene-24772, nbis-gene-29313, nbis-gene-39275
Poaceae	Zoysia macrostachya	4	Zma_g10615, Zma_g12991, Zma_g28864, Zma_g8174
Portulacaceae	Portulaca oleracea	9	evm.TU.LG01.2708, evm.TU.LG01.661, evm.TU.LG02.119 ... evm.TU.LG03.103, evm.TU.LG03.40, evm.TU.LG04.111, evm.TU.LG09.1355, evm.TU.LG13.595, evm.TU.LG21.289
Posidoniaceae	Posidonia oceanica	6	gene.Posoc02g20870, gene.Posoc03g18930, gene.Posoc04g00790 ... gene.Posoc04g05020, gene.Posoc04g08340, gene.Posoc06g04060
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_15_RagTag.27, evm.TU.Scaffold_16_RagTag.508 ... evm.TU.Scaffold_2_RagTag.1693, evm.TU.Scaffold_4_RagTag.798
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-22770, nbisL1-mrna-26314, nbisL1-mrna-28562
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-11173, nbisL1-mrna-12127, nbisL1-mrna-17740 ... nbisL1-mrna-4675
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-13984, nbisL1-mrna-16549, nbisL1-mrna-17378 ... nbisL1-mrna-22139
Rhizophoraceae	Kandelia candel	3	add.evm.TU.utg000001l.10, add.evm.TU.utg000009l.99 ... add.evm.TU.utg000022l.114
Rhizophoraceae	Kandelia obovata	1	Maker00005079
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-17804, nbisL1-mrna-18055, nbisL1-mrna-21385 ... nbisL1-mrna-22554
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-16735, nbisL1-mrna-19286, nbisL1-mrna-2899 ... nbisL1-mrna-6390
Salicaceae	Populus euphratica	3	populus_peu03223, populus_peu20951, populus_peu34071
Solanaceae	Lycium barbarum	5	gene-LOC132615449, gene-LOC132626202, gene-LOC132632251 ... gene-LOC132634259, gene-LOC132635333
Solanaceae	Solanum chilense	4	SOLCI002067500, SOLCI005335600, SOLCI005589000 ... SOLCI007448000
Solanaceae	Solanum pennellii	5	gene-LOC107014001, gene-LOC107014545, gene-LOC107015792 ... gene-LOC107026854, gene-LOC107027412
Tamaricaceae	Reaumuria soongarica	3	STRG.23691_chr05_+, gene_204, gene_3921
Tamaricaceae	Tamarix chinensis	3	TC01G4045, TC03G0303, TC06G2820
Zosteraceae	Zostera marina	5	Zosma01g13280.v3.1, Zosma03g03610.v3.1, Zosma04g05220.v3.1 ... Zosma06g00430.v3.1, Zosma06g20220.v3.1