Basic Information
Locus ID:
Ag1G01523
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
heat shock protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 188826234 | 188832522 | - | Ag1G01523 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.86 | 90,190.62 Da | 43.36 | 81.91 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16927 | HATPase_Hsp90-like | 92 | 287 | 5.44641E-100 | - |
| Pfam | PF02518 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 104 | 263 | 5.4E-13 | IPR003594 |
| Pfam | PF00183 | Hsp90 protein | 269 | 763 | 5.0E-193 | IPR001404 |
| SUPERFAMILY | SSF110942 | HSP90 C-terminal domain | 621 | 742 | 1.44E-33 | IPR037196 |
| SUPERFAMILY | SSF55874 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 82 | 297 | 1.03E-61 | IPR036890 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 341 | 599 | 3.94E-91 | IPR020568 |
| Gene3D | G3DSA:1.20.120.790 | - | 599 | 746 | 2.8E-52 | IPR037196 |
| Gene3D | G3DSA:3.30.230.80 | - | 339 | 511 | 2.0E-74 | - |
| Gene3D | G3DSA:3.40.50.11260 | - | 512 | 598 | 2.7E-32 | - |
| Gene3D | G3DSA:3.30.565.10 | - | 67 | 312 | 8.5E-90 | IPR036890 |
| SMART | SM00387 | HKATPase_4 | 104 | 266 | 8.1E-6 | IPR003594 |
| PIRSF | PIRSF002583 | HSP90_HTPG | 59 | 786 | 1.7E-239 | IPR001404 |
| ProSitePatterns | PS00298 | Heat shock hsp90 proteins family signature. | 102 | 111 | - | IPR019805 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 152 | 169 | 9.2E-63 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 199 | 221 | 9.2E-63 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 170 | 187 | 9.2E-63 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 254 | 271 | 9.2E-63 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 273 | 291 | 9.2E-63 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 103 | 125 | 9.2E-63 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 82 | 102 | 9.2E-63 | IPR020575 |
| Hamap | MF_00505 | Chaperone protein HtpG [htpG]. | 71 | 743 | 26.453878 | IPR001404 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 755 | 796 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 762 | 779 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G04030.1 | Chaperone protein htpG family protein. Encodes a chloroplast-targeted 90-kDa heat shock protein located in the stroma involved in red-light mediated deetiolation response. Mutants are resistant to chlorate, have elongated hypocotyls in light, and affect the expression of NR2, CAB, and RBCS but NOT NR1 and NiR. | 0 |
| RefSeq | XP_017226516.1 | PREDICTED: heat shock protein 90-5, chloroplastic [Daucus carota subsp. sativus] | 0 |
| Q9SIF2 | Heat shock protein 90-5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=HSP90-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YFY0 | HATPase_c domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030145 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 272.046143 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 256.456055 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 228.769394 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 252.190369 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 220.937119 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 245.273438 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 158.681381 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 165.705536 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 210.988159 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 206.058594 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 195.371292 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 260.908752 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 258.560028 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 231.447403 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 27.487064 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 40.568947 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 46.912247 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 87.145271 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 114.112137 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 85.933167 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 90.024857 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 45.598099 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 47.146656 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 52.665276 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 60.363461 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 108.569252 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 91.561142 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 152.125793 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 91.648048 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 43.180157 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 72.0504 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 51.544415 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 104.29995 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 99.577225 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 113.896896 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 77.591988 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 71.909866 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 62.650341 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 244.060333 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 84.209312 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 130.018753 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 38.320358 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 48.205482 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 116.741959 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 57.980488 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 56.527512 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 36.755875 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 154.428604 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 106.606018 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 132.535004 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology