halophFGD

Basic Information

Locus ID: Ag1G01497

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	187766988	187770839	+	Ag1G01497

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.49	123,432.65 Da	37.23	100.05	0.03

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08263	Leucine rich repeat N-terminal domain	37	75	6.1E-12	IPR013210
Pfam	PF13855	Leucine rich repeat	632	691	4.0E-7	IPR001611
Pfam	PF13855	Leucine rich repeat	182	242	7.2E-8	IPR001611
Pfam	PF00069	Protein kinase domain	844	1041	9.7E-41	IPR000719
Pfam	PF13855	Leucine rich repeat	562	619	7.6E-7	IPR001611
Pfam	PF00560	Leucine Rich Repeat	256	278	0.36	IPR001611
SUPERFAMILY	SSF52058	L domain-like	36	337	1.05E-56	-
SUPERFAMILY	SSF52058	L domain-like	251	711	4.42E-49	-
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	823	1111	4.59E-68	IPR011009
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	36	221	7.0E-43	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	346	471	1.7E-19	IPR032675
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	802	915	2.7E-25	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	222	345	9.6E-28	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	491	737	6.2E-46	IPR032675
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	916	1115	5.1E-54	-
SMART	SM00369	LRR_typ_2	229	253	370.0	IPR003591
SMART	SM00369	LRR_typ_2	133	157	100.0	IPR003591
SMART	SM00369	LRR_typ_2	181	205	140.0	IPR003591
SMART	SM00369	LRR_typ_2	606	627	340.0	IPR003591
SMART	SM00220	serkin_6	840	1114	3.5E-28	IPR000719
SMART	SM00369	LRR_typ_2	302	326	6.7	IPR003591
SMART	SM00369	LRR_typ_2	630	653	41.0	IPR003591
SMART	SM00369	LRR_typ_2	654	677	220.0	IPR003591
SMART	SM00369	LRR_typ_2	678	702	83.0	IPR003591
ProSiteProfiles	PS50011	Protein kinase domain profile.	840	1114	36.47068	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	960	972	-	IPR008271
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	846	868	-	IPR017441

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G02130.2	-
RefSeq	XP_017235040.1	PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Daucus carota subsp. sativus]
Swiss-Prot	Q9S7I6	LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana OX=3702 GN=RPK2 PE=1 SV=1
TrEMBL	A0A175YFM9	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030043 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.639134	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.369394	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.430865	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.340087	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.642998	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.673049	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.302976	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.517709	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	6.785361	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	6.598964	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	6.894073	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	2.949436	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	4.230684	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	2.326522	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.333322	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.325228	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.116309	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	1.12386	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.35308	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	2.921786	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	2.954068	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.383218	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.102299	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.384734	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.4295	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.107859	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.054814	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.203416	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.058264	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.224997		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.084511		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.076826		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	2.004994		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	1.303333		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	4.11941		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.6713		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.302737		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.657735		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.008753	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.914331	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.791078	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	1.266861	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	1.383569	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	4.17248	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	2.503987	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	1.35131	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	2.991793	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.532063	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.540828	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.175968	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg17584, jg19759, jg34828, jg40197, jg9258, jg9259
Aizoaceae	Mesembryanthemum crystallinum	2	gene_24968, gene_3855
Amaranthaceae	Atriplex hortensis	2	Ah012593, Ah026410
Amaranthaceae	Beta vulgaris	2	BVRB_6g136390, BVRB_6g151740
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg14050, Sbi_jg44767, Sbi_jg51916
Amaranthaceae	Salicornia europaea	2	Seu_jg27319, Seu_jg9956
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00002198, GOSA_00025368, GOSA_00025370
Amaranthaceae	Suaeda glauca	4	Sgl31778, Sgl34868, Sgl37063, Sgl40265
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000002026, gene:ENSEOMG00000002358 ... gene:ENSEOMG00000002669, gene:ENSEOMG00000004011, gene:ENSEOMG00000025335, gene:ENSEOMG00000025959
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.6AG0008900, CQ.Regalona.r1.6AG0017060 ... CQ.Regalona.r1.6BG0009690
Anacardiaceae	Pistacia vera	4	pistato.v30006980, pistato.v30021520, pistato.v30193170 ... pistato.v30226860
Apiaceae	Apium graveolens	5	Ag1G01497, Ag6G00444, Ag7G01428, AgUnG00323, AgUnG00436
Arecaceae	Cocos nucifera	4	COCNU_06G016170, COCNU_13G005540, COCNU_14G011170 ... COCNU_15G005900
Arecaceae	Phoenix dactylifera	4	gene-LOC103704476, gene-LOC103708261, gene-LOC103712388 ... gene-LOC103718209
Asparagaceae	Asparagus officinalis	3	AsparagusV1_02.1467.V1.1, AsparagusV1_03.2008.V1.1 ... AsparagusV1_03.2591.V1.1
Asteraceae	Flaveria trinervia	3	Ftri13G24020, Ftri18G17288, Ftri9G23079
Brassicaceae	Arabidopsis thaliana	2	AT1G69270.1, AT3G02130.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10018335m.g.v1.0, Thhalv10019938m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g01200.v2.2, Sp5g24330.v2.2
Brassicaceae	Brassica nigra	4	BniB03g046620.2N, BniB05g066220.2N, BniB07g034840.2N ... BniB07g061470.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq07G1157, Ceq08G0015, Ceq08G0438
Casuarinaceae	Casuarina glauca	3	Cgl07G1214, Cgl08G0014, Cgl08G0391
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno10g06900, gene.Cymno10g06910, gene.Cymno14g08910 ... gene.Cymno14g08920
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g29620, gene.Thate08g13590
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-2200
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.401, evm.TU.LG04.572, evm.TU.LG05.43
Plantaginaceae	Plantago ovata	5	Pov_00008182, Pov_00008184, Pov_00008587, Pov_00025960 ... Pov_00028072
Plumbaginaceae	Limonium bicolor	2	Lb4G22327, Lb6G32585
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0006240, gene-QOZ80_1BG0054960 ... gene-QOZ80_7AG0551900, gene-QOZ80_7AG0575930, gene-QOZ80_7BG0582980, gene-QOZ80_7BG0607390
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.2HG0126860.1.CDS1 ... HORVU.MOREX.r3.2HG0156970.1.CDS1, HORVU.MOREX.r3.3HG0231730.1.CDS1, HORVU.MOREX.r3.5HG0511490.1.CDS1
Poaceae	Lolium multiflorum	4	gene-QYE76_039872, gene-QYE76_043153, gene-QYE76_053321 ... gene-QYE76_061772
Poaceae	Oryza coarctata	5	Oco02G000190, Oco05G023970, Oco06G024850, Oco13G011990 ... Oco14G012750
Poaceae	Oryza sativa	2	LOC_Os03g54900.1, LOC_Os07g41140.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G076300, gene-BS78_02G007300 ... gene-BS78_02G341600, gene-BS78_03G096200
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0303329, Pt_Chr0303338, Pt_Chr0603033
Poaceae	Sporobolus alterniflorus	12	Chr01G004900, Chr03G002570, Chr04G028880, Chr07G027880 ... Chr0G018720, Chr12G037350, Chr19G002730, Chr19G018830, Chr24G002400, Chr27G014540, Chr28G000390, Chr28G011120
Poaceae	Thinopyrum elongatum	4	Tel2E01G341700, Tel2E01G479300, Tel3E01G146900 ... Tel5E01G625000
Poaceae	Triticum dicoccoides	8	gene_TRIDC2AG022530, gene_TRIDC2AG036940 ... gene_TRIDC2BG026400, gene_TRIDC2BG040830, gene_TRIDC3AG009720, gene_TRIDC3BG013410, gene_TRIDC5AG057170, gene_TRIDC5BG061340
Poaceae	Triticum aestivum	11	TraesCS2A02G176500.1.cds1, TraesCS2A02G260600.1.cds1 ... TraesCS2B02G202900.1.cds1, TraesCS2B02G281400.1, TraesCS2D02G183900.1, TraesCS2D02G263100.1.cds1, TraesCS3B02G096000.1.cds1, TraesCS3D02G081000.1.cds1, TraesCS5A02G393000.1.cds1, TraesCS5B02G397900.1.cds1, TraesCS5D02G402900.1.cds1
Poaceae	Zea mays	3	Zm00001eb214630_P001, Zm00001eb298670_P001 ... Zm00001eb326880_P001
Poaceae	Zoysia japonica	5	nbis-gene-16206, nbis-gene-32366, nbis-gene-32367 ... nbis-gene-50440, nbis-gene-56236
Poaceae	Zoysia macrostachya	3	Zma_g2764, Zma_g5897, Zma_g7454
Portulacaceae	Portulaca oleracea	4	evm.TU.LG03.2222, evm.TU.LG13.500, evm.TU.LG17.1277 ... evm.TU.LG21.194
Posidoniaceae	Posidonia oceanica	2	gene.Posoc05g14630, gene.Posoc06g19760
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_11_RagTag.248, evm.TU.Scaffold_3_RagTag.1708 ... evm.TU.Scaffold_6_RagTag.343
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-14174, nbisL1-mrna-1932, nbisL1-mrna-2019 ... nbisL1-mrna-2078, nbisL1-mrna-2160
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-10595, nbisL1-mrna-11952, nbisL1-mrna-9238
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-14319, nbisL1-mrna-2901, nbisL1-mrna-306
Rhizophoraceae	Kandelia candel	3	add.evm.TU.utg000005l.97, add.evm.TU.utg000011l.94 ... add.evm.TU.utg000019l.89
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-16918, nbisL1-mrna-21422, nbisL1-mrna-21602
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-17244, nbisL1-mrna-18217, nbisL1-mrna-18218 ... nbisL1-mrna-18966
Salicaceae	Populus euphratica	5	populus_peu06809, populus_peu09334, populus_peu09335 ... populus_peu25142, populus_peu27104
Solanaceae	Lycium barbarum	2	gene-LOC132615815, gene-LOC132618905
Solanaceae	Solanum chilense	2	SOLCI000455700, SOLCI000565900
Solanaceae	Solanum pennellii	2	gene-LOC107014790, gene-LOC107016390
Tamaricaceae	Reaumuria soongarica	1	STRG.3614_chr02_-
Zosteraceae	Zostera marina	1	Zosma03g29840.v3.1