halophFGD

Basic Information

Locus ID: Ag1G01447

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: eukaryotic translation initiation factor

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	184803046	184805130	-	Ag1G01447

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.29	17,264.16 Da	28.37	79.06	-0.47

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd04468	S1_eIF5A	86	156	7.48066E-31	-
Pfam	PF01287	Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold	85	154	2.3E-28	IPR020189
SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	86	156	7.42E-25	IPR012340
SUPERFAMILY	SSF50104	Translation proteins SH3-like domain	15	93	7.02E-27	IPR008991
Gene3D	G3DSA:2.30.30.30	-	1	85	1.1E-42	IPR014722
Gene3D	G3DSA:2.40.50.140	-	86	158	1.9E-33	-
SMART	SM01376	eIF_5a_2	85	154	8.3E-33	IPR020189
TIGRFAM	TIGR00037	eIF_5A: translation elongation factor IF5A	17	153	4.0E-41	IPR001884
PIRSF	PIRSF003025	Transl_init_eIF5A	1	157	2.3E-66	IPR001884
ProSitePatterns	PS00302	Eukaryotic initiation factor 5A hypusine signature.	50	57	-	IPR019769
MobiDBLite	mobidb-lite	consensus disorder prediction	1	21	-	-

Gene Ontology

Biological Process:

GO:0045901 (positive regulation of translational elongation) GO:0045905 (positive regulation of translational termination)

Molecular Function:

GO:0003723 (RNA binding) GO:0003746 (translation elongation factor activity) GO:0043022 (ribosome binding)

KEGG Pathway

KO Term:

K03263 (translation initiation factor 5A)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G13950.1	eukaryotic elongation factor 5A-1. Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced.
RefSeq	XP_017223700.1	PREDICTED: eukaryotic translation initiation factor 5A-4 [Daucus carota subsp. sativus]
Swiss-Prot	P56336	Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum OX=4113 GN=EIF5A4 PE=2 SV=1
TrEMBL	A0A175YJ82	Eukaryotic translation initiation factor 5A OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030986 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	307.312897	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	260.118713	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	260.810211	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	264.401825	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	270.754761	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	281.47995	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	242.488953	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	201.271927	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	255.677139	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	259.889954	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	260.020203	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	247.146729	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	245.501785	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	319.970093	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	365.93634	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	286.554169	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	474.021118	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	408.677277	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	380.499939	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	483.363068	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	454.110443	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1009.983459	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	1031.22937	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	785.962708	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	856.94281	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	532.638794	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	422.890411	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	550.361816	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	535.861023	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	933.353699		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	792.455933		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	797.237427		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	797.063354		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	595.126648		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	600.795044		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	724.059814		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1110.210327		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	986.849426		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	293.74231	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	211.879471	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	284.864441	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	180.503021	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	369.540436	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	915.837708	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	833.892273	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	218.328934	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	740.863403	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	410.681	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	476.014587	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	475.364929	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	9	jg15598, jg21922, jg31541, jg33077, jg34802, jg3986, jg5388 ... jg7131, jg9295
Aizoaceae	Mesembryanthemum crystallinum	3	gene_13815, gene_3828, gene_8184
Amaranthaceae	Atriplex hortensis	3	Ah013076, Ah028316, Ah028318
Amaranthaceae	Beta vulgaris	3	BVRB_6g153120, BVRB_6g153140, BVRB_6g153150
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg21040, Sbi_jg22752, Sbi_jg31050, Sbi_jg5007 ... Sbi_jg58232
Amaranthaceae	Salicornia europaea	3	Seu_jg12972, Seu_jg16622, Seu_jg25837
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00004692, GOSA_00018258
Amaranthaceae	Suaeda glauca	4	Sgl54763, Sgl60066, Sgl62418, Sgl66967
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000000489, gene:ENSEOMG00000000752 ... gene:ENSEOMG00000002172, gene:ENSEOMG00000012664, gene:ENSEOMG00000015577, gene:ENSEOMG00000015765, gene:ENSEOMG00000026483, gene:ENSEOMG00000026981, gene:ENSEOMG00000027418
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.6AG0000380, CQ.Regalona.r1.6AG0000390 ... CQ.Regalona.r1.6BG0000340
Anacardiaceae	Pistacia vera	3	pistato.v30144500, pistato.v30227280, pistato.v30265890
Apiaceae	Apium graveolens	1	Ag1G01447
Arecaceae	Cocos nucifera	5	COCNU_01G005080, COCNU_01G014870, COCNU_05G002480 ... COCNU_06G016840, COCNU_13G006180
Arecaceae	Phoenix dactylifera	6	gene-LOC103696274, gene-LOC103705232, gene-LOC103707400 ... gene-LOC103707794, gene-LOC103714249, gene-LOC120106196
Asparagaceae	Asparagus officinalis	6	AsparagusV1_01.10.V1.1, AsparagusV1_04.121.V1.1 ... AsparagusV1_04.1293.V1.1, AsparagusV1_05.1755.V1.1, AsparagusV1_05.3378.V1.1, AsparagusV1_07.155.V1.1
Asteraceae	Flaveria trinervia	4	Ftri13G03865, Ftri18G09694, Ftri2G23435, Ftri8G33201
Brassicaceae	Arabidopsis thaliana	3	AT1G13950.1, AT1G26630.1, AT1G69410.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10008974m.g.v1.0, Thhalv10008978m.g.v1.0 ... Thhalv10019263m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g12310.v2.2, Sp1g22170.v2.2, Sp3g30940.v2.2 ... Sp5g24460.v2.2
Brassicaceae	Brassica nigra	4	BniB03g018760.2N, BniB03g046780.2N, BniB04g026220.2N ... BniB04g040170.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G2553, Ceq07G1201
Casuarinaceae	Casuarina glauca	3	Cgl01G2012, Cgl03G2693, Cgl07G1265
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno01g07140, gene.Cymno06g07660, gene.Cymno09g06400
Dunaliellaceae	Dunaliella salina	1	Dusal.0606s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	7	gene.Thate01g21450, gene.Thate04g06330, gene.Thate04g20860 ... gene.Thate04g29560, gene.Thate05g10920, gene.Thate05g22180, gene.Thate06g20000
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-11548, nbisL1-mrna-12569
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.322, evm.TU.LG07.281, evm.TU.LG10.616
Plantaginaceae	Plantago ovata	2	Pov_00015190, Pov_00027060
Plumbaginaceae	Limonium bicolor	5	Lb1G00057, Lb1G00058, Lb1G01822, Lb1G01830, Lb5G29421
Poaceae	Echinochloa crus-galli	8	AH03.3596, AH03.48, AH05.3568, BH03.53, BH05.3581, CH01.645 ... CH03.4038, CH03.73
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_3AG0215280, gene-QOZ80_3BG0260400 ... gene-QOZ80_7AG0552170, gene-QOZ80_7AG0575480, gene-QOZ80_7BG0583160, gene-QOZ80_7BG0606890
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.2HG0128640.1, HORVU.MOREX.r3.2HG0156100.1 ... HORVU.MOREX.r3.5HG0448610.1, HORVU.MOREX.r3.6HG0627020.1
Poaceae	Lolium multiflorum	2	gene-QYE76_002174, gene-QYE76_039942
Poaceae	Oryza coarctata	8	Oco05G024120, Oco06G025030, Oco13G000500, Oco13G011740 ... Oco14G000490, Oco14G012520, Oco23G007170, Oco24G006770
Poaceae	Oryza sativa	4	LOC_Os03g55150.1, LOC_Os07g02210.1, LOC_Os07g40580.1 ... LOC_Os12g32240.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G075000, gene-BS78_02G005200 ... gene-BS78_02G338500
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0206034, Pt_Chr0303363, Pt_Chr0303460, Pt_Chr0304723
Poaceae	Sporobolus alterniflorus	10	Chr01G004720, Chr04G029020, Chr12G037160, Chr19G002870 ... Chr19G018770, Chr24G002520, Chr24G016030, Chr28G000340, Chr28G010960, Chr28G010990
Poaceae	Thinopyrum elongatum	4	Tel2E01G352800, Tel2E01G476800, Tel5E01G198500 ... Tel6E01G676000
Poaceae	Triticum dicoccoides	6	gene_TRIDC2AG023260, gene_TRIDC2AG037250 ... gene_TRIDC2BG027540, gene_TRIDC2BG040570, gene_TRIDC5AG016200, gene_TRIDC5BG018030
Poaceae	Triticum aestivum	9	TraesCS2A02G182600.1, TraesCS2A02G262500.1 ... TraesCS2B02G209100.1, TraesCS2B02G279600.1, TraesCS2D02G190400.1, TraesCS2D02G261500.1, TraesCS5A02G104800.1, TraesCS5B02G108600.1, TraesCS5D02G116200.2
Poaceae	Zea mays	3	Zm00001eb108410_P001, Zm00001eb118210_P001 ... Zm00001eb326630_P002
Poaceae	Zoysia japonica	4	nbis-gene-15121, nbis-gene-16225, nbis-gene-482 ... nbis-gene-52559
Poaceae	Zoysia macrostachya	4	Zma_g2749, Zma_g440, Zma_g5869, Zma_g6782
Portulacaceae	Portulaca oleracea	6	evm.TU.LG02.21, evm.TU.LG07.630, evm.TU.LG09.1287 ... evm.TU.LG12.1498, evm.TU.LG15.311, evm.TU.LG21.739
Posidoniaceae	Posidonia oceanica	5	gene.Posoc01g18700, gene.Posoc02g07660, gene.Posoc03g12970 ... gene.Posoc04g08960, gene.Posoc06g17520
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_10_RagTag.122, evm.TU.Scaffold_15_RagTag.585 ... evm.TU.Scaffold_17_RagTag.393, evm.TU.Scaffold_4_RagTag.2179
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-22914, nbisL1-mrna-25305, nbisL1-mrna-26753
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-1280, nbisL1-mrna-21283, nbisL1-mrna-4762
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-14927, nbisL1-mrna-15784, nbisL1-mrna-16561 ... nbisL1-mrna-4929
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000001l.295, evm.TU.utg000008l.1277 ... evm.TU.utg000013l.280, evm.TU.utg000033l.78
Rhizophoraceae	Kandelia obovata	4	Maker00000742, Maker00002379, Maker00006641, Maker00014730
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-11369, nbisL1-mrna-16695, nbisL1-mrna-1914 ... nbisL1-mrna-7192
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-14516, nbisL1-mrna-14953, nbisL1-mrna-23490 ... nbisL1-mrna-9214
Salicaceae	Populus euphratica	4	populus_peu05590, populus_peu06767, populus_peu12231 ... populus_peu20664
Solanaceae	Lycium barbarum	5	gene-LOC132602968, gene-LOC132613580, gene-LOC132626074 ... gene-LOC132632905, gene-LOC132637008
Solanaceae	Solanum chilense	6	SOLCI001360400, SOLCI003235700, SOLCI003353500 ... SOLCI005437300, SOLCI006668900, SOLCI007526400
Solanaceae	Solanum pennellii	5	gene-LOC107007310, gene-LOC107008261, gene-LOC107015480 ... gene-LOC107017972, gene-LOC107026128
Tamaricaceae	Reaumuria soongarica	4	STRG.29435_chr10_-, STRG.33014_chr09_+, gene_13659 ... gene_6403
Tamaricaceae	Tamarix chinensis	3	TC01G3017, TC03G0818, TC06G0040
Zosteraceae	Zostera marina	3	Zosma01g01560.v3.1, Zosma03g06420.v3.1, Zosma03g12890.v3.1