Basic Information
Locus ID:
Ag1G01440
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 184587026 | 184592831 | - | Ag1G01440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 48,364.99 Da | 34.45 | 84.02 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 163 | 415 | 1.50647E-107 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 32 | 96 | 4.5E-7 | IPR020683 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 160 | 415 | 2.0E-63 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 154 | 426 | 1.11E-77 | IPR011009 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 34 | 122 | 3.89E-19 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 11 | 122 | 8.2E-21 | IPR036770 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 237 | 430 | 6.1E-54 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 141 | 236 | 3.4E-24 | - |
| SMART | SM00220 | serkin_6 | 157 | 422 | 1.0E-60 | IPR000719 |
| SMART | SM00248 | ANK_2a | 65 | 94 | 1.2E-6 | IPR002110 |
| PIRSF | PIRSF000654 | ILK | 1 | 433 | 5.5E-167 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 65 | 97 | 13.41059 | IPR002110 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 157 | 429 | 46.180737 | IPR000719 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 65 | 97 | 12.03652 | - |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 163 | 184 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 276 | 288 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 270 | 288 | 3.8E-9 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 386 | 408 | 3.8E-9 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 232 | 245 | 3.8E-9 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14000.1 | VH1-interacting kinase. Encodes a protein with similarity to members of the C1 subgroup of MAP kinase kinase kinases. Interacts physically with the receptor kinase BRL2/VH1 and appears to be involved in auxin and brassinosteriod signaling. | 0 |
| RefSeq | XP_017226749.1 | PREDICTED: serine/threonine-protein kinase STY8 [Daucus carota subsp. sativus] | 0 |
| Q9XI87 | Serine/threonine-protein kinase VIK OS=Arabidopsis thaliana OX=3702 GN=VIK PE=1 SV=1 | 0 | |
| TrEMBL | A0A166EBH0 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007175 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 6.518486 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.284759 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.20636 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.520284 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.195377 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.529288 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.87858 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.434795 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 7.153154 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 7.616997 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 5.305979 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 4.301571 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 5.079715 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 4.624863 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.460385 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 8.53058 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.806655 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 8.910657 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.419474 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 17.611149 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 8.519148 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.170849 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 3.379369 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.067893 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 6.429245 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.792108 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.803629 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.076167 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.12798 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.568548 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.433331 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.3776 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 5.076717 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.332192 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 8.253229 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.70016 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.392755 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.699744 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.622447 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.263662 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.750229 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 27.372602 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 47.34446 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 6.511045 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 14.879295 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 28.306564 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 6.469612 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 11.256168 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 12.642763 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 15.080871 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg5397, jg7124, jg9309 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3813 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah013136 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g153360 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg42975, Sbi_jg45582, Sbi_jg45588 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11433 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002103, GOSA_00002104 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35661, Sgl41000 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003740, gene:ENSEOMG00000015686 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0000640, CQ.Regalona.r1.6BG0000590 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30227450 |
| Apiaceae | Apium graveolens | 3 | Ag1G01440, Ag6G00417, Ag8G01379 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G005520, COCNU_08G003330 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714502, gene-LOC103721231 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.1665.V1.1, AsparagusV1_03.1756.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G05681, Ftri9G22492 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G14000.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007646m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g12360.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g008910.2N, BniB06g038890.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0179 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0181 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno02g03520, gene.Cymno04g10300, gene.Cymno05g11500 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0019s00022.v1.0, Dusal.0540s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g08140 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11159 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.306 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027086 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G32617 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3803, BH03.4086, CH03.4366 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0578550, gene-QOZ80_7BG0609810 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0122010.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_039640 |
| Poaceae | Oryza coarctata | 2 | Oco13G013550, Oco14G014330 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g43900.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G361400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304766 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G001620, Chr24G014450, Chr27G015680, Chr28G012470 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G309100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG019540, gene_TRIDC2BG023370 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G155500.1, TraesCS2B02G180500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb328410_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-33050 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g5627 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.217, evm.TU.LG12.1489, evm.TU.LG13.428 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g24540, gene.Posoc02g27950 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_17_RagTag.379 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-22928, nbisL1-mrna-26768 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1275 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14917 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000013l.274 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006572 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7187 |
| Rhizophoraceae | Rhizophora mangle | 8 | nbisL1-mrna-14961, nbisL1-mrna-23325, nbisL1-mrna-23979 ... |
| Salicaceae | Populus euphratica | 3 | populus_peu06755, populus_peu20645, populus_peu20646 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132642036 |
| Solanaceae | Solanum chilense | 1 | SOLCI002408400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009053, gene-LOC107020796 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.14111_chr05_-, gene_49 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3030, TC03G0793 |
| Zosteraceae | Zostera marina | 2 | Zosma02g19680.v3.1, Zosma04g04750.v3.1 |