Basic Information
Locus ID:
Ag1G01365
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 181778743 | 181779576 | - | Ag1G01365 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 11,036.73 Da | 38.12 | 101.18 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 2 | 83 | 2.3E-7 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69910.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017224080.1 | PREDICTED: LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.5 [Daucus carota subsp. sativus] | 0 |
| F4I3V3 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.5 OS=Arabidopsis thaliana OX=3702 GN=LRK10L-1.5 PE=3 SV=1 | 0 | |
| TrEMBL | A0A175YK52 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_031067 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.790705 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.619519 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.419639 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.541436 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.642686 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.241539 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.472338 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.067852 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 14.859538 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 15.916578 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 17.873159 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 11.83022 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 9.268775 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 9.635538 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 13.105196 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 14.681915 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 13.213219 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 8.318149 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.115064 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.367637 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.374195 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 10.357015 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 9.66155 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.370491 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.569575 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.976636 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 12.586292 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.645759 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 9.805842 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.236277 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.239439 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.746561 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.83784 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.079269 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.051429 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.043748 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.769424 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.068564 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.010548 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.151674 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.749112 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.479068 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.362475 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 13.772272 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 14.819409 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 15.222023 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg9390 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3712 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah013347 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g154890 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg43102, Sbi_jg45695 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11540 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001944 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35886, Sgl41199 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000246, gene:ENSEOMG00000005164 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0007180, CQ.Regalona.r1.6BG0007750 |
| Apiaceae | Apium graveolens | 1 | Ag1G01365 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G013800 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721966 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1592.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G14106 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G69910.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018260m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g25020.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g041050.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0017 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0007 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g06960 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.171 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026999 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0212070, gene-QOZ80_3BG0257260 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0520850.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061049 |
| Poaceae | Oryza coarctata | 2 | Oco05G026310, Oco06G027240 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g58750.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G046800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0105521 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G002500, Chr04G030680, Chr07G029680, Chr12G034340 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G708800 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC5AG064420, gene_TRIDC5BG068930 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS5A02G449000.1.cds1, TraesCS5B02G453800.1.cds1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-15383 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2563, Zma_g261 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.307, evm.TU.LG21.11 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g13800 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_17_RagTag.313 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23016 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12528 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14839 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000013l.69 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006383 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19571 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15794 |
| Salicaceae | Populus euphratica | 1 | populus_peu21854 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641489 |
| Solanaceae | Solanum chilense | 1 | SOLCI000401700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018463 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.14018_chr05_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3244 |
| Zosteraceae | Zostera marina | 1 | Zosma04g20820.v3.1 |