halophFGD

Basic Information

Locus ID: Ag1G01350

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Involved in the biogenesis of the 60S ribosomal subunit

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	180478772	180483130	+	Ag1G01350

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.48	76,277.93 Da	42.77	83.39	-0.63

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd01897	NOG	169	355	8.32991E-97	-
Pfam	PF17835	NOG1 N-terminal helical domain	6	165	3.1E-57	IPR041623
Pfam	PF08155	NOGCT (NUC087) domain	410	463	1.4E-28	IPR012973
Pfam	PF06858	Nucleolar GTP-binding protein 1 (NOG1)	236	292	1.3E-24	IPR010674
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	48	312	9.18E-38	IPR027417
Gene3D	G3DSA:1.20.120.1190	-	3	161	4.0E-60	-
Gene3D	G3DSA:3.40.50.300	-	162	374	1.7E-51	IPR027417
PIRSF	PIRSF038919	NOG1	1	669	2.9E-268	IPR024926
ProSiteProfiles	PS51710	OBG-type guanine nucleotide-binding (G) domain profile.	169	355	38.060631	IPR031167
PRINTS	PR00326	GTP1/OBG GTP-binding protein family signature	171	191	9.8E-8	IPR006073
PRINTS	PR00326	GTP1/OBG GTP-binding protein family signature	219	234	9.8E-8	IPR006073
PRINTS	PR00326	GTP1/OBG GTP-binding protein family signature	192	210	9.8E-8	IPR006073
MobiDBLite	mobidb-lite	consensus disorder prediction	519	669	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	636	650	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	567	592	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	402	424	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	402	418	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	519	540	-	-
Coils	Coil	Coil	395	422	-	-

Gene Ontology

Molecular Function:

GO:0005525 (GTP binding)

KEGG Pathway

KO Term:

K06943 (nucleolar GTP-binding protein)

Pathway:

ko03008 (Ribosome biogenesis in eukaryotes) map03008 (Ribosome biogenesis in eukaryotes)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G50920.1	Nucleolar GTP-binding protein.
RefSeq	XP_017235695.1	PREDICTED: nucleolar GTP-binding protein 1-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9C6I8	Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=At1g50920 PE=2 SV=1
TrEMBL	A0A161X5Q1	Nucleolar GTP-binding protein 1 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007102 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	62.781334	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	46.969669	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	37.304523	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	38.328209	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	41.459953	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	39.497921	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	29.198956	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	23.676615	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	89.576828	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	87.891464	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	101.943855	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	108.106911	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	90.157417	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	71.865486	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	21.380068	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	28.10578	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	31.938881	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	33.113472	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	32.924328	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	42.42321	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	33.302704	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	57.504635	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	75.526321	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	56.520885	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	62.669666	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	46.916153	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	43.139641	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	43.052246	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	50.196331	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	19.842415		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	31.212488		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	29.699108		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	35.626514		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	46.667679		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	41.319767		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	31.405632		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	18.747957		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	20.289103		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	72.153542	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	29.12361	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	9.217986	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	60.525375	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	69.965439	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	99.128616	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	106.03334	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	61.495003	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	93.641907	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	83.737457	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	84.240067	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	89.958336	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg34663, jg34664, jg9436
Aizoaceae	Mesembryanthemum crystallinum	3	gene_19863, gene_3483, gene_6706
Amaranthaceae	Atriplex hortensis	2	Ah018226, Ah022463
Amaranthaceae	Beta vulgaris	2	BVRB_7g159190, BVRB_8g196300
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg15211, Sbi_jg15212, Sbi_jg15213, Sbi_jg17870 ... Sbi_jg62489
Amaranthaceae	Salicornia europaea	2	Seu_jg1066, Seu_jg26508
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00007166
Amaranthaceae	Suaeda glauca	4	Sgl12089, Sgl12285, Sgl17382, Sgl17515
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000001336, gene:ENSEOMG00000008789 ... gene:ENSEOMG00000031357, gene:ENSEOMG00000044825, gene:ENSEOMG00000047054
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.3BG0008910, CQ.Regalona.r1.8AG0017660 ... CQ.Regalona.r1.8BG0018740
Apiaceae	Apium graveolens	2	Ag1G01350, Ag6G00348
Arecaceae	Cocos nucifera	2	COCNU_10G008390, contig69665468G000010
Arecaceae	Phoenix dactylifera	2	gene-LOC103707749, gene-LOC103719553
Asparagaceae	Asparagus officinalis	2	AsparagusV1_04.203.V1.1, AsparagusV1_10.1894.V1.1
Asteraceae	Flaveria trinervia	2	Ftri13G11877, Ftri18G29747
Brassicaceae	Arabidopsis thaliana	2	AT1G10300.1, AT1G50920.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10006811m.g.v1.0, Thhalv10009939m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp1g03550.v2.2
Brassicaceae	Brassica nigra	4	BniB01g052800.2N, BniB03g001040.2N, BniB04g029400.2N ... BniB06g046130.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq01G0240
Casuarinaceae	Casuarina glauca	1	Cgl01G0245
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno07g00300
Dunaliellaceae	Dunaliella salina	2	Dusal.0556s00014.v1.0, Dusal.0556s00015.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate02g05150
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-6064
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG05.712, evm.TU.LG05.713, evm.TU.LG07.896
Plantaginaceae	Plantago ovata	2	Pov_00003516, Pov_00024791
Plumbaginaceae	Limonium bicolor	1	Lb0G36742
Poaceae	Echinochloa crus-galli	5	AH06.639, BH06.710, BH07.1878, CH06.734, CH07.1744
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_6AG0512260, gene-QOZ80_6BG0464140 ... gene-QOZ80_8BG0661800
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.7HG0661600.1.CDS1
Poaceae	Lolium multiflorum	4	gene-QYE76_018801, gene-QYE76_020049, gene-QYE76_050359 ... gene-QYE76_065371
Poaceae	Oryza coarctata	2	Oco11G004460, Oco12G004410
Poaceae	Oryza sativa	2	LOC_Os06g09570.1, LOC_Os07g01920.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G297100, gene-BS78_10G073900
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0405154
Poaceae	Sporobolus alterniflorus	5	Chr03G009720, Chr08G010050, Chr11G021000, Chr14G003150 ... Chr21G002420
Poaceae	Thinopyrum elongatum	4	Tel5E01G072400, Tel5E01G534400, Tel5E01G534500 ... Tel7E01G284500
Poaceae	Triticum dicoccoides	5	gene_TRIDC5AG004330, gene_TRIDC5AG049580 ... gene_TRIDC5BG053360, gene_TRIDC7AG019730, gene_TRIDC7BG009720
Poaceae	Triticum aestivum	9	TraesCS4D02G022000.1.cds1, TraesCS5A02G030200.1.cds1 ... TraesCS5A02G337600.1, TraesCS5B02G336400.1, TraesCS5D02G038300.1.cds1, TraesCS5D02G342200.1, TraesCS7A02G160000.1, TraesCS7B02G064900.1.cds1, TraesCS7D02G160700.1
Poaceae	Zea mays	2	Zm00001eb278540_P002, Zm00001eb373990_P001
Poaceae	Zoysia japonica	1	nbis-gene-34957
Poaceae	Zoysia macrostachya	2	Zma_g29268, Zma_g31516
Portulacaceae	Portulaca oleracea	3	evm.TU.LG03.885, evm.TU.LG11.1448, evm.TU.LG12.850
Posidoniaceae	Posidonia oceanica	1	gene.Posoc05g00640
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_12_RagTag.17, evm.TU.Scaffold_13_RagTag.1052
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-24783, nbisL1-mrna-29968
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-3545
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-16415, nbisL1-mrna-23096
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000015l.635
Rhizophoraceae	Kandelia obovata	1	Maker00015496
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-4535
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-20748
Salicaceae	Populus euphratica	3	populus_peu01924, populus_peu02380, populus_peu35883
Solanaceae	Lycium barbarum	1	gene-LOC132645151
Solanaceae	Solanum chilense	1	SOLCI005586700
Solanaceae	Solanum pennellii	2	gene-LOC107002805, gene-LOC107026471
Tamaricaceae	Reaumuria soongarica	2	gene_12564, gene_8169
Tamaricaceae	Tamarix chinensis	2	TC05G1687, TC11G1415
Zosteraceae	Zostera marina	2	Zosma04g24140.v3.1, Zosma04g24170.v3.1