Basic Information
Locus ID:
Ag1G01334
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Ubiquitin-like-specific protease 1D
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 179711959 | 179721692 | - | Ag1G01334 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.26 | 69,600.10 Da | 57.92 | 67.58 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02902 | Ulp1 protease family, C-terminal catalytic domain | 360 | 557 | 3.7E-42 | IPR003653 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 319 | 558 | 2.94E-45 | IPR038765 |
| Gene3D | G3DSA:3.30.310.130 | - | 387 | 515 | 1.6E-70 | - |
| Gene3D | G3DSA:1.10.418.20 | - | 336 | 549 | 1.6E-70 | - |
| ProSiteProfiles | PS50600 | Ubiquitin-like protease family profile. | 345 | 538 | 26.395761 | IPR003653 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 304 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 166 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 238 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 234 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 166 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 54 | - | - |
| Coils | Coil | Coil | 64 | 101 | - | - |
| Coils | Coil | Coil | 395 | 415 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60220.1 | UB-like protease 1D. Encodes a deSUMOylating enzyme. In vitro it has both peptidase activity and isopeptidase activity: it can cleave C-terminal residues from SUMO to activate it for attachment to a target protein and it can also act on the isopeptide bond between SUMO and another protein. sGFP:OTS1 protein accumulates in the nucleus. Double mutant analysis with ULP1C/OTS2 indicates that these genes are involved in salt stress responses and flowering time regulation. Over-expression of 35S:OTS1 increases salt tolerance and reduces the level of SUMO-conjugated proteins. OTS1 transcript levels do not appear to change in response to salt, but, salt stress reduces the level of OTS1 protein in a proteasome-dependent manner. | 0 |
| RefSeq | XP_017226471.1 | PREDICTED: ubiquitin-like-specific protease 1D isoform X4 [Daucus carota subsp. sativus] | 0 |
| Q2PS26 | Ubiquitin-like-specific protease 1D OS=Arabidopsis thaliana OX=3702 GN=ULP1D PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B6ZMV5 | Putative ubiquitin-like-specific protease 1D isoform X2 OS=Davidia involucrata OX=16924 GN=Din_013554 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 10.790403 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.948273 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.761652 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.411338 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.744945 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.44372 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 6.200429 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 6.65725 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 6.722704 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 6.044805 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 6.130022 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 7.807099 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 6.799065 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 6.007328 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.422709 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.171572 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.326331 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 3.784755 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.342869 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.980294 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 7.281199 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.244031 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.653365 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 5.039849 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.181886 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 7.870258 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.026129 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.524142 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.740693 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.056512 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.869665 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.554295 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.771659 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.898461 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.444938 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.073314 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.248299 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.596662 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.875032 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.918137 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.595318 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.83353 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 4.03248 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 6.049478 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.870384 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 4.732708 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 6.133949 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 7.110387 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 6.520986 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.226788 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg34636, jg9460 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_3645, gene_4190 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah013550 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g148950 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42939, Sbi_jg45550 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11397 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002402 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35364, Sgl40718 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000047, gene:ENSEOMG00000014343 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0005460, CQ.Regalona.r1.6BG0005710 |
| Apiaceae | Apium graveolens | 2 | Ag1G01334, Ag6G00333 |
| Arecaceae | Cocos nucifera | 3 | COCNU_05G009910, COCNU_13G000110, scaffold005896G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103701973, gene-LOC103705845, gene-LOC103715955 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2791.V1.1, AsparagusV1_05.1147.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri13G29943, Ftri18G03634, Ftri18G25601, Ftri8G28674 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G10570.1, AT1G60220.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007260m.g.v1.0, Thhalv10023376m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g09220.v2.2, Sp2g04460.v2.2, SpUn0106_0010.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g019350.2N, BniB04g020080.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0809 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0863 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g10350, gene.Cymno09g07800 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0112s00007.v1.0, Dusal.0253s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g08440, gene.Thate02g22320, gene.Thate06g12750 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5598 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1035 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00022408, Pov_00034371 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00896 |
| Poaceae | Echinochloa crus-galli | 12 | AH02.3107, AH05.4000, AH06.1458, BH02.3180, BH05.4097 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0032450, gene-QOZ80_6AG0520320 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0287460.1, HORVU.MOREX.r3.5HG0431790.1 ... |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_000321, gene-QYE76_000791, gene-QYE76_000833 ... |
| Poaceae | Oryza coarctata | 4 | Oco02G020150, Oco11G008780, Oco12G008800, Oco24G009860 |
| Poaceae | Oryza sativa | 3 | LOC_Os01g53630.1, LOC_Os06g29310.1, LOC_Os12g41380.1 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_03G269500, gene-BS78_08G139400 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0403920, Pt_Chr0403959, Pt_Chr0602549 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr02G010210, Chr04G018740, Chr05G023180, Chr06G019590 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G459200, Tel5E01G117700, Tel7E01G416700 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC3AG041300, gene_TRIDC3BG046600 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS3A02G278200.1, TraesCS3B02G312400.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb031350_P001, Zm00001eb153850_P005 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-26405, nbis-gene-28854 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g11087, Zma_g26100, Zma_g29652 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.396, evm.TU.LG12.1311, evm.TU.LG13.225 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc02g26010, gene.Posoc03g19030, gene.Posoc04g05100 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.741 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26916 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10217 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15653 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.399 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002494 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11264 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17770 |
| Salicaceae | Populus euphratica | 1 | populus_peu37051 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132615930, gene-LOC132641351 |
| Solanaceae | Solanum chilense | 1 | SOLCI002489200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107018287, gene-LOC107018673 |
| Tamaricaceae | Reaumuria soongarica | 2 | MSTRG.165_chr01_-, STRG.9183_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0942 |
| Zosteraceae | Zostera marina | 2 | Zosma06g00390.v3.1, Zosma06g07230.v3.1 |