Basic Information
Locus ID:
Ag1G01293
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein mago nashi
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 178136050 | 178139488 | + | Ag1G01293 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 18,288.68 Da | 50.16 | 76.94 | -0.43 |
Protein Domain:
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02140.1 | mago nashi family protein. | 0 |
| RefSeq | XP_017246097.1 | PREDICTED: protein mago nashi homolog [Daucus carota subsp. sativus] | 0 |
| P49030 | Protein mago nashi homolog 2 OS=Oryza sativa subsp. japonica OX=39947 GN=MAGO2 PE=1 SV=2 | 0 | |
| TrEMBL | A5H9J2 | Mago nashi-2 protein OS=Physalis pubescens OX=300354 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 41.692513 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 32.279423 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 27.719765 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 23.472092 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 28.758436 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 29.809076 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 26.108145 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 27.250759 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 62.211956 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 56.680763 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 67.991798 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 70.185654 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 66.266716 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 56.661312 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 72.399422 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 74.552841 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 107.84922 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 60.747684 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 58.311092 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 55.945049 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 66.310776 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 131.654694 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 122.599083 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 129.589767 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 102.579292 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 70.424919 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 85.73539 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 77.720802 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 87.500183 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 21.02771 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 28.616558 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 22.609188 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 26.542852 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 62.69923 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 33.808064 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 23.826302 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 23.105364 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 23.717867 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 35.479412 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 15.849201 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 13.232841 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 87.121216 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 92.158043 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 126.4701 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 102.425339 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 113.31311 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 131.225739 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 108.809135 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 111.633072 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 95.48275 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg14143, jg2450 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_18737, gene_25472 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025253 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g144310 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42487, Sbi_jg45111 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27061 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023484 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71334, Sgl74929 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000000078, gene:ENSEOMG00000002298 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0012630, CQ.Regalona.r1.6BG0013520 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30000730, pistato.v30001560 |
| Apiaceae | Apium graveolens | 2 | Ag1G00428, Ag1G01293 |
| Arecaceae | Cocos nucifera | 2 | COCNU_10G003390, contig69388225G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103704670, gene-LOC103713609 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.3219.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G26766 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G02140.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10009013m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g00120.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g000930.2N, BniB03g036640.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1046 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G2544, Cgl02G2545 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g04710 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0031s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g21930, gene.Thate07g03150 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-2673, nbisL1-mrna-8022 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.56 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00029737, Pov_00040768 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G14902, Lb2G14934 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.2311, AH08.55, BH03.2084, BH08.7, CH03.2637, CH08.188 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0382430, gene-QOZ80_5BG0429330 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0706620.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_022665 |
| Poaceae | Oryza coarctata | 3 | Oco16G000450, Oco23G005030, Oco24G004590 |
| Poaceae | Oryza sativa | 2 | LOC_Os08g01660.1, LOC_Os12g18880.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_07G008700, gene-BS78_07G008900 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0101615, Pt_Chr0402694, Pt_Chr0404873 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G024410, Chr16G000220, Chr17G000190, Chr20G014030 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G554900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG045340, gene_TRIDC7BG037280 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G323400.1, TraesCS7B02G224300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb174310_P001, Zm00001eb260270_P002 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-41394, nbis-gene-46327, nbis-gene-51953 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g22345, Zma_g23494 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.364, evm.TU.LG12.1343, evm.TU.LG21.523 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc06g12380, gene.Posoc09g03220 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.247, evm.TU.Scaffold_8_RagTag.1488 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-19472, nbisL1-mrna-8361, nbisL1-mrna-8438 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-8360, nbisL1-mrna-8368 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-15189, nbisL1-mrna-7041 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.132 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002794 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9474 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18854, nbisL1-mrna-22785 |
| Salicaceae | Populus euphratica | 1 | populus_peu31873 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132611087, gene-LOC132638562 |
| Solanaceae | Solanum chilense | 1 | SOLCI005376000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012135 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10208 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G2201, TC04G0124 |
| Zosteraceae | Zostera marina | 1 | Zosma05g01620.v3.1 |