Basic Information
Locus ID:
Ag1G01236
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Leucine-rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 175701338 | 175704561 | - | Ag1G01236 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.14 | 77,595.25 Da | 37.05 | 94.50 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 429 | 719 | 3.33071E-90 | - |
| Pfam | PF00069 | Protein kinase domain | 428 | 643 | 1.3E-31 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 69 | 2.5E-9 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 102 | 161 | 9.2E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 31 | 289 | 3.6E-49 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 428 | 716 | 2.7E-57 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 30 | 193 | 9.8E-47 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 499 | 720 | 3.2E-47 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 411 | 498 | 1.5E-16 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 194 | 294 | 2.4E-23 | IPR032675 |
| SMART | SM00220 | serkin_6 | 427 | 719 | 1.1E-12 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 148 | 172 | 8.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 100 | 124 | 20.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 197 | 221 | 7.3 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 423 | 719 | 31.961933 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 546 | 558 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 151 | 164 | 8.2E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 197 | 210 | 8.2E-6 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 309 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67510.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_017224018.1 | PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Daucus carota subsp. sativus] | 0 |
| Q9ZU46 | Receptor protein kinase-like protein ZAR1 OS=Arabidopsis thaliana OX=3702 GN=ZAR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YKE9 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_031190 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.439097 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.287967 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.30838 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.73547 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.769455 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.58672 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.855387 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.266769 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 24.628914 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 25.76882 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 28.706446 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 23.375696 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 21.572674 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 17.666319 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 11.106333 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 14.067181 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.08357 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 9.499772 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.737595 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 9.042483 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 9.163892 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 13.986056 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 15.714571 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 11.65249 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.93227 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 12.188214 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 10.738064 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 6.011155 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 12.260475 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.311491 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.472094 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.562362 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.384608 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.382211 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.766126 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.469981 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.076643 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.81743 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 12.964657 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.180689 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.923587 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.67815 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.88923 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.305669 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.218493 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.668925 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 4.150114 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 11.766174 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 8.753559 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.979065 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg5561, jg6966 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3526 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah013884 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g151130 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42695, Sbi_jg45319 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26855 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002620 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35039, Sgl40430 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000003844, gene:ENSEOMG00000014741 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0003270, CQ.Regalona.r1.6BG0003160 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30228400 |
| Apiaceae | Apium graveolens | 2 | Ag1G01236, Ag8G02276 |
| Arecaceae | Cocos nucifera | 1 | scaffold003417G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702926 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1015.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G12061 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G67510.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10017984m.g.v1.0, Thhalv10018190m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g22510.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g044720.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1047 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g02990 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g21980 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.748 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00022217, Pov_00033698 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G29686 |
| Poaceae | Echinochloa crus-galli | 6 | AH04.751, AH05.504, BH04.1087, BH05.551, CH04.1270, CH05.633 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0386330, gene-QOZ80_5BG0433490 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0194460.1, HORVU.MOREX.r3.4HG0341800.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_063891 |
| Poaceae | Oryza coarctata | 4 | Oco21G004790, Oco22G005460, Oco23G004060, Oco24G003610 |
| Poaceae | Oryza sativa | 3 | LOC_Os11g19480.1, LOC_Os11g19490.1, LOC_Os12g13300.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G058400 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0107750, Pt_Chr0700259, Pt_Chr0700449 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G024170, Chr06G026580, Chr31G004150 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G753300, Tel4E01G119400 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG063630, gene_TRIDC2BG067760 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G444000.2, TraesCS2B02G465200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb090350_P001, Zm00001eb411730_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-35900, nbis-gene-43379, nbis-gene-52008 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g17834, Zma_g18702, Zma_g24914 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1336, evm.TU.LG12.388 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g15110 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_17_RagTag.135 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23219 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-9319, nbisL1-mrna-9320 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14651 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000013l.24 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006574 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6992 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15976 |
| Salicaceae | Populus euphratica | 2 | populus_peu07625, populus_peu21658 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641265 |
| Solanaceae | Solanum chilense | 1 | SOLCI001102500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018536 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.19745_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0716 |
| Zosteraceae | Zostera marina | 2 | Zosma03g16620.v3.1, Zosma04g17530.v3.1 |