halophFGD

Basic Information

Locus ID: Ag1G01186

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: ubiquitin

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	172094427	172098159	-	Ag1G01186

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.61	97,165.31 Da	44.08	97.58	-0.09

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00078	HECTc	494	849	1.34016E-109	IPR000569
Pfam	PF00632	HECT-domain (ubiquitin-transferase)	540	849	5.7E-73	IPR000569
Pfam	PF00240	Ubiquitin family	67	135	1.1E-14	IPR000626
SUPERFAMILY	SSF56204	Hect, E3 ligase catalytic domain	490	837	2.49E-93	IPR035983
SUPERFAMILY	SSF54236	Ubiquitin-like	59	139	2.12E-15	IPR029071
Gene3D	G3DSA:3.90.1750.10	Hect, E3 ligase catalytic domains	494	725	4.6E-60	-
Gene3D	G3DSA:3.10.20.90	-	57	150	1.5E-16	-
Gene3D	G3DSA:3.30.2160.10	Hect, E3 ligase catalytic domain	611	693	4.6E-60	-
Gene3D	G3DSA:3.30.2410.10	Hect, E3 ligase catalytic domain	737	849	3.1E-31	-
SMART	SM00119	hect_3	509	849	4.3E-84	IPR000569
SMART	SM00213	ubq_7	64	136	1.2E-11	IPR000626
ProSiteProfiles	PS50053	Ubiquitin domain profile.	64	140	16.102118	IPR000626
ProSiteProfiles	PS50237	HECT domain profile.	511	851	66.348824	IPR000569
PRINTS	PR00348	Ubiquitin signature	75	95	1.7E-5	IPR019956
PRINTS	PR00348	Ubiquitin signature	96	116	1.7E-5	IPR019956
PRINTS	PR00348	Ubiquitin signature	117	138	1.7E-5	IPR019956

Gene Ontology

Molecular Function:

GO:0004842 (ubiquitin-protein transferase activity) GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K10591 (E3 ubiquitin-protein ligase NEDD4 [EC:2.3.2.26])

Pathway:

ko04011 (MAPK signaling pathway - yeast) map04011 (MAPK signaling pathway - yeast) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G12570.1	ubiquitin protein ligase 5. Knock-out mutants showed accelerated senescence of leaves.
RefSeq	XP_017225452.1	PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9SU29	E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana OX=3702 GN=UPL5 PE=1 SV=1
TrEMBL	A0A1U7VEA0	E3 ubiquitin-protein ligase UPL5-like OS=Nicotiana sylvestris OX=4096 GN=LOC104212547 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.321093	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.308073	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.018194	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.089172	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.273882	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.039122	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.071539	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.03487	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.017397		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.088974	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg21820
Aizoaceae	Mesembryanthemum crystallinum	1	gene_21972
Amaranthaceae	Atriplex hortensis	1	Ah017350
Amaranthaceae	Beta vulgaris	1	BVRB_8g185030
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg25857, Sbi_jg9706
Amaranthaceae	Salicornia europaea	1	Seu_jg18960
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00011583
Amaranthaceae	Suaeda glauca	3	Sgl41711, Sgl41713, Sgl46509
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000010566, gene:ENSEOMG00000035215 ... gene:ENSEOMG00000045369
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.8AG0000800, CQ.Regalona.r1.8BG0000660
Anacardiaceae	Pistacia vera	3	pistato.v30067160, pistato.v30067550, pistato.v30068530
Apiaceae	Apium graveolens	9	Ag11G04978, Ag1G00251, Ag1G00311, Ag1G01185, Ag1G01186 ... Ag1G01202, Ag8G00480, Ag8G01532, Ag8G02083
Arecaceae	Cocos nucifera	4	COCNU_01G007030, COCNU_01G012260, COCNU_01G012270 ... contig69527005G000010
Arecaceae	Phoenix dactylifera	2	gene-LOC103713564, gene-LOC103719049
Asparagaceae	Asparagus officinalis	2	AsparagusV1_05.1263.V1.1, AsparagusV1_05.1264.V1.1
Asteraceae	Flaveria trinervia	1	Ftri5G25875
Brassicaceae	Arabidopsis thaliana	1	AT4G12570.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10027607m.g.v1.0, Thhalv10028412m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp6g04940.v2.2
Brassicaceae	Brassica nigra	4	BniB02g072810.2N, BniB05g056220.2N, BniB08g037520.2N ... BniB08g048630.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq01G2095
Casuarinaceae	Casuarina glauca	1	Cgl01G2294
Dunaliellaceae	Dunaliella salina	1	Dusal.0456s00005.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g08720
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-3569, nbisL1-mrna-7735
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG12.1219
Plantaginaceae	Plantago ovata	8	Pov_00006039, Pov_00007522, Pov_00016326, Pov_00027453 ... Pov_00029140, Pov_00029142, Pov_00029145, Pov_00039053
Plumbaginaceae	Limonium bicolor	1	Lb1G00531
Poaceae	Echinochloa crus-galli	6	AH03.2377, AH08.1998, BH03.2503, BH08.2096, CH03.2701 ... CH08.2273
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_6AG0539460, gene-QOZ80_6BG0492820 ... gene-QOZ80_8AG0636370, gene-QOZ80_8BG0665020
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.5HG0490450.1
Poaceae	Lolium multiflorum	3	gene-QYE76_006082, gene-QYE76_006083, gene-QYE76_029940
Poaceae	Oryza coarctata	2	Oco17G007750, Oco18G007990
Poaceae	Oryza sativa	1	LOC_Os09g31090.2
Poaceae	Paspalum vaginatum	2	gene-BS78_02G222000, gene-BS78_07G141200
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0501129, Pt_Chr0701610
Poaceae	Sporobolus alterniflorus	6	Chr10G007420, Chr11G011930, Chr16G016810, Chr17G016170 ... Chr20G000640, Chr29G002710
Poaceae	Thinopyrum elongatum	3	Tel5E01G421700, Tel7E01G1007900, Tel7E01G430600
Poaceae	Triticum dicoccoides	6	gene_TRIDC5AG019310, gene_TRIDC5AG040600 ... gene_TRIDC5BG043300, gene_TRIDC5BG044220, gene_TRIDC7AG031210, gene_TRIDC7BG023380
Poaceae	Triticum aestivum	5	TraesCS5A02G262600.3, TraesCS5B02G261000.1 ... TraesCS5D02G270200.2, TraesCS7A02G244000.1, TraesCS7B02G496200.1
Poaceae	Zea mays	2	Zm00001eb101780_P001, Zm00001eb316530_P001
Poaceae	Zoysia japonica	2	nbis-gene-17377, nbis-gene-19510
Poaceae	Zoysia macrostachya	2	Zma_g24326, Zma_g32775
Portulacaceae	Portulaca oleracea	5	evm.TU.LG01.1964, evm.TU.LG11.383, evm.TU.LG14.1142 ... evm.TU.LG18.1348, evm.TU.LG20.534
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g10080
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_7_RagTag.1490, evm.TU.Scaffold_8_RagTag.308
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-19992, nbisL1-mrna-20303, nbisL1-mrna-9973
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-17689, nbisL1-mrna-177
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-13430, nbisL1-mrna-17923
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000002l.189
Rhizophoraceae	Kandelia obovata	2	Maker00003440, Maker00011730
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-14922
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-12175
Salicaceae	Populus euphratica	3	populus_peu10575, populus_peu10653, populus_peu26479
Solanaceae	Lycium barbarum	2	gene-LOC132604181, gene-LOC132640239
Solanaceae	Solanum chilense	8	SOLCI002230800, SOLCI003330700, SOLCI003548800 ... SOLCI003950300, SOLCI003950400, SOLCI004316600, SOLCI005599900, SOLCI006077400
Solanaceae	Solanum pennellii	7	gene-LOC107002406, gene-LOC107003590, gene-LOC107006572 ... gene-LOC107006573, gene-LOC107020838, gene-LOC107029876, gene-LOC107029878
Tamaricaceae	Reaumuria soongarica	2	MSTRG.10800_chr06_+, gene_452
Tamaricaceae	Tamarix chinensis	1	TC08G0186