Basic Information
Locus ID:
Ag1G01185
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 172032485 | 172037628 | - | Ag1G01185 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 89,856.88 Da | 50.42 | 85.73 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 421 | 780 | 1.856E-113 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 471 | 779 | 1.0E-73 | IPR000569 |
| Pfam | PF00240 | Ubiquitin family | 78 | 147 | 2.0E-14 | IPR000626 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 422 | 768 | 2.35E-95 | IPR035983 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 75 | 158 | 4.37E-14 | IPR029071 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 424 | 657 | 4.9E-60 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 668 | 780 | 2.0E-32 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 67 | 159 | 9.0E-16 | - |
| Gene3D | G3DSA:3.30.2160.10 | Hect, E3 ligase catalytic domain | 542 | 624 | 4.9E-60 | - |
| SMART | SM00119 | hect_3 | 440 | 780 | 9.0E-84 | IPR000569 |
| SMART | SM00213 | ubq_7 | 75 | 147 | 4.5E-11 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 75 | 151 | 15.361754 | IPR000626 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 442 | 782 | 69.68148 | IPR000569 |
| PRINTS | PR00348 | Ubiquitin signature | 86 | 106 | 5.3E-5 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 107 | 127 | 5.3E-5 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 128 | 149 | 5.3E-5 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12570.1 | ubiquitin protein ligase 5. Knock-out mutants showed accelerated senescence of leaves. | 0 |
| RefSeq | XP_017225452.1 | PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Daucus carota subsp. sativus] | 0 |
| Q9SU29 | E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana OX=3702 GN=UPL5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J4ZCG5 | E3 ubiquitin-protein ligase UPL5 OS=Nyssa sinensis OX=561372 GN=F0562_018790 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.441836 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.330093 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.105983 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.416862 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.434657 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.127088 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.379287 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.034523 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.030672 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.600613 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.391936 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.290566 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.553562 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.23426 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.467389 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.298677 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.067739 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.076989 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.282121 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.248872 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.059909 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.802397 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.135517 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.111612 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.019882 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.080537 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.069687 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.099451 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.190178 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.029889 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21820 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21972 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017350 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g185030 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25857, Sbi_jg9706 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18960 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011583 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl41711, Sgl41713, Sgl46509 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010566, gene:ENSEOMG00000035215 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0000800, CQ.Regalona.r1.8BG0000660 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30067160, pistato.v30067550, pistato.v30068530 |
| Apiaceae | Apium graveolens | 9 | Ag11G04978, Ag1G00251, Ag1G00311, Ag1G01185, Ag1G01186 ... |
| Arecaceae | Cocos nucifera | 4 | COCNU_01G007030, COCNU_01G012260, COCNU_01G012270 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103713564, gene-LOC103719049 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.1263.V1.1, AsparagusV1_05.1264.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G25875 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G12570.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10027607m.g.v1.0, Thhalv10028412m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g04940.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g072810.2N, BniB05g056220.2N, BniB08g037520.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G2095 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2294 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0456s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g08720 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3569, nbisL1-mrna-7735 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.1219 |
| Plantaginaceae | Plantago ovata | 8 | Pov_00006039, Pov_00007522, Pov_00016326, Pov_00027453 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00531 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.2377, AH08.1998, BH03.2503, BH08.2096, CH03.2701 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0539460, gene-QOZ80_6BG0492820 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0490450.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_006082, gene-QYE76_006083, gene-QYE76_029940 |
| Poaceae | Oryza coarctata | 2 | Oco17G007750, Oco18G007990 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g31090.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G222000, gene-BS78_07G141200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0501129, Pt_Chr0701610 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr10G007420, Chr11G011930, Chr16G016810, Chr17G016170 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel5E01G421700, Tel7E01G1007900, Tel7E01G430600 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC5AG019310, gene_TRIDC5AG040600 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS5A02G262600.3, TraesCS5B02G261000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb101780_P001, Zm00001eb316530_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-17377, nbis-gene-19510 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g24326, Zma_g32775 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG01.1964, evm.TU.LG11.383, evm.TU.LG14.1142 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g10080 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1490, evm.TU.Scaffold_8_RagTag.308 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-19992, nbisL1-mrna-20303, nbisL1-mrna-9973 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17689, nbisL1-mrna-177 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13430, nbisL1-mrna-17923 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.189 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003440, Maker00011730 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14922 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12175 |
| Salicaceae | Populus euphratica | 3 | populus_peu10575, populus_peu10653, populus_peu26479 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132604181, gene-LOC132640239 |
| Solanaceae | Solanum chilense | 8 | SOLCI002230800, SOLCI003330700, SOLCI003548800 ... |
| Solanaceae | Solanum pennellii | 7 | gene-LOC107002406, gene-LOC107003590, gene-LOC107006572 ... |
| Tamaricaceae | Reaumuria soongarica | 2 | MSTRG.10800_chr06_+, gene_452 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0186 |