halophFGD

Basic Information

Locus ID: Ag1G01171

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Eukaryotic translation initiation factor 2 subunit

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	170476079	170476714	-	Ag1G01171

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.94	23,455.51 Da	37.39	71.04	-0.51

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01873	Domain found in IF2B/IF5	80	189	1.4E-31	IPR002735
SUPERFAMILY	SSF100966	Translation initiation factor 2 beta, aIF2beta, N-terminal domain	64	163	1.44E-21	IPR016189
SUPERFAMILY	SSF75689	Zinc-binding domain of translation initiation factor 2 beta	160	194	3.79E-9	IPR016190
Gene3D	G3DSA:3.30.30.170	-	62	196	4.2E-39	-
SMART	SM00653	eIF2Bneu4	81	190	1.1E-40	IPR002735

Gene Ontology

Biological Process:

GO:0006413 (translational initiation)

Molecular Function:

GO:0003743 (translation initiation factor activity)

KEGG Pathway

KO Term:

K03238 (translation initiation factor 2 subunit 2)

Pathway:

ko03013 (Nucleocytoplasmic transport) map03013 (Nucleocytoplasmic transport)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G20920.2	eukaryotic translation initiation factor 2 beta subunit. protein synthesis initiation factor eIF2 beta
RefSeq	XP_052173898.1	eukaryotic translation initiation factor 2 subunit beta-like isoform X5 [Diospyros lotus]
Swiss-Prot	Q41969	Eukaryotic translation initiation factor 2 subunit beta OS=Arabidopsis thaliana OX=3702 GN=EIF2B PE=1 SV=3
TrEMBL	A0A3P6CYB7	eIF2B_5 domain-containing protein (Fragment) OS=Brassica campestris OX=3711 GN=BRAA10T43990Z PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	1.667318	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.778688	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.243918	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.951279	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.476754	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	5.031769	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	3.01483	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.052522	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.051943	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.370255		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.09418		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	6.265273	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.831932	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.854391	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	1.179241	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.809819	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.33159	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg14687, jg35709
Aizoaceae	Mesembryanthemum crystallinum	2	gene_16091, gene_17104
Amaranthaceae	Atriplex hortensis	6	Ah011512, Ah017538, Ah025298, Ah031565, Ah031566, Ah032159
Amaranthaceae	Beta vulgaris	1	BVRB_2g038680
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg2123, Sbi_jg30102, Sbi_jg34382, Sbi_jg40132 ... Sbi_jg43553, Sbi_jg50046
Amaranthaceae	Salicornia europaea	3	Seu_jg1702, Seu_jg18349, Seu_jg2643
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00004124, GOSA_00011313
Amaranthaceae	Suaeda glauca	4	Sgl46304, Sgl51020, Sgl66111, Sgl70427
Amaranthaceae	Chenopodium album	11	gene:ENSEOMG00000003222, gene:ENSEOMG00000005402 ... gene:ENSEOMG00000012098, gene:ENSEOMG00000013180, gene:ENSEOMG00000019424, gene:ENSEOMG00000027043, gene:ENSEOMG00000035018, gene:ENSEOMG00000035567, gene:ENSEOMG00000038286, gene:ENSEOMG00000046447, gene:ENSEOMG00000049816
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.2AG0003170, CQ.Regalona.r1.6AG0015320 ... CQ.Regalona.r1.6BG0016120, CQ.Regalona.r1.7BG0025900, CQ.Regalona.r1.8AG0001870, CQ.Regalona.r1.8BG0001790
Anacardiaceae	Pistacia vera	2	pistato.v30095010, pistato.v30269370
Apiaceae	Apium graveolens	2	Ag1G01171, Ag7G00132
Arecaceae	Cocos nucifera	2	COCNU_16G005660, contig69425917G000010
Arecaceae	Phoenix dactylifera	2	gene-LOC103706238, gene-LOC103722171
Asparagaceae	Asparagus officinalis	1	AsparagusV1_07.732.V1.1
Asteraceae	Flaveria trinervia	2	Ftri12G30945, Ftri9G10289
Brassicaceae	Arabidopsis thaliana	3	AT3G07920.1, AT5G01940.1, AT5G20920.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10014385m.g.v1.0, Thhalv10014626m.g.v1.0 ... Thhalv10022299m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp6g03660.v2.2, Sp6g23600.v2.2
Brassicaceae	Brassica nigra	3	BniB02g042020.2N, BniB05g042650.2N, BniB08g046610.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq04G0687, Ceq05G0954, Ceq08G2457
Casuarinaceae	Casuarina glauca	2	Cgl04G0787, Cgl08G2692
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno06g12290
Dunaliellaceae	Dunaliella salina	1	Dusal.0119s00005.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g30480, gene.Thate02g30500, gene.Thate04g21360
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-8740, nbisL1-mrna-8744
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG01.529, evm.TU.LG01.530, evm.TU.LG01.531 ... evm.TU.LG01.532, evm.TU.LG02.2385
Plantaginaceae	Plantago ovata	2	Pov_00007646, Pov_00036728
Plumbaginaceae	Limonium bicolor	2	Lb3G21416, Lb4G25700
Poaceae	Echinochloa crus-galli	6	AH01.3741, AH03.4074, BH01.4090, BH03.4412, CH01.4354 ... CH07.98
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_3AG0247140, gene-QOZ80_3BG0281100 ... gene-QOZ80_7AG0581910, gene-QOZ80_7BG0613050
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0111800.1, HORVU.MOREX.r3.4HG0378950.1
Poaceae	Lolium multiflorum	1	gene-QYE76_038699
Poaceae	Oryza coarctata	4	Oco05G012810, Oco06G013680, Oco13G015960, Oco14G016770
Poaceae	Oryza sativa	2	LOC_Os03g21550.1, LOC_Os07g48300.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G364000, gene-BS78_02G391900
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0102633, Pt_Chr0602298
Poaceae	Sporobolus alterniflorus	10	Chr01G034040, Chr04G010660, Chr07G001280, Chr0G002450 ... Chr0G003610, Chr12G005570, Chr19G000260, Chr24G012320, Chr25G012410, Chr27G017350
Poaceae	Thinopyrum elongatum	2	Tel2E01G227300, Tel4E01G310100
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG012400, gene_TRIDC2BG015180 ... gene_TRIDC4AG018880, gene_TRIDC4BG031040
Poaceae	Triticum aestivum	6	TraesCS2A02G104200.1, TraesCS2B02G121200.1 ... TraesCS2D02G103900.1, TraesCS4A02G134000.1, TraesCS4B02G170900.1, TraesCS4D02G172900.1
Poaceae	Zea mays	3	Zm00001eb015940_P001, Zm00001eb111600_P001 ... Zm00001eb330750_P001
Poaceae	Zoysia japonica	4	nbis-gene-1683, nbis-gene-33255, nbis-gene-3369 ... nbis-gene-81
Poaceae	Zoysia macrostachya	4	Zma_g1265, Zma_g3689, Zma_g5795, Zma_g7086
Portulacaceae	Portulaca oleracea	4	evm.TU.LG07.203, evm.TU.LG10.76, evm.TU.LG15.761 ... evm.TU.LG17.71
Posidoniaceae	Posidonia oceanica	2	gene.Posoc04g06800, gene.Posoc04g06820
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_12_RagTag.406
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-24342
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-19617
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-19670
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000015l.383, evm.TU.utg000027l.326
Rhizophoraceae	Kandelia obovata	2	Maker00015397, Maker00018159
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-5659
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-11891
Salicaceae	Populus euphratica	1	populus_peu14527
Solanaceae	Lycium barbarum	2	gene-LOC132606643, gene-LOC132622035
Solanaceae	Solanum pennellii	1	gene-LOC107023729
Tamaricaceae	Reaumuria soongarica	2	STRG.9748_chr06_+, gene_5727
Tamaricaceae	Tamarix chinensis	2	TC02G2353, TC09G2470
Zosteraceae	Zostera marina	1	Zosma03g02900.v3.1