halophFGD

Basic Information

Locus ID: Ag1G01165

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: PUX4

Description: UBA and UBX domain-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	169815152	169820928	-	Ag1G01165

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.00	32,328.36 Da	55.12	64.78	-0.70

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd01770	UBX_UBXN2	229	300	2.33422E-39	-
Pfam	PF00789	UBX domain	227	300	4.9E-16	IPR001012
Pfam	PF08059	SEP domain	116	189	6.3E-24	IPR012989
SUPERFAMILY	SSF102848	NSFL1 (p97 ATPase) cofactor p47, SEP domain	105	196	3.4E-27	IPR036241
SUPERFAMILY	SSF54236	Ubiquitin-like	184	299	6.89E-25	IPR029071
Gene3D	G3DSA:3.10.20.90	-	176	301	1.3E-38	-
Gene3D	G3DSA:3.30.420.210	SEP domain	110	173	6.9E-23	IPR036241
SMART	SM00166	ubx_3	222	301	2.1E-5	IPR001012
SMART	SM00553	faf_3	108	201	4.8E-39	IPR012989
ProSiteProfiles	PS50033	UBX domain profile.	223	300	16.612085	IPR001012
ProSiteProfiles	PS51399	SEP domain profile.	111	175	30.466908	IPR012989
MobiDBLite	mobidb-lite	consensus disorder prediction	190	213	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	37	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	73	110	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	165	213	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	59	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	80	110	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14012 (UBX domain-containing protein 1)

Pathway:

ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G04210.1	plant UBX domain containing protein 4. Arabidopsis thaliana CDC48-interacting UBX-domain protein (PUX4)
RefSeq	XP_017226712.1	PREDICTED: plant UBX domain-containing protein 4-like [Daucus carota subsp. sativus]
Swiss-Prot	Q8RWU7	Plant UBX domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=PUX4 PE=1 SV=1
TrEMBL	A0A175YJI6	Plant UBX domain-containing protein 4 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030890 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	53.995167	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	50.272484	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	72.544891	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	71.816383	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	76.884491	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	51.09906	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	42.986862	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	43.68362	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	70.429436	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	64.127747	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	67.921661	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	74.129227	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	69.828911	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	64.739189	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	50.829746	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	46.172234	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	51.24614	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	57.311985	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	44.050411	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	61.991745	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	71.897583	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	59.513424	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	66.134239	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	59.517223	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	56.730751	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	55.079742	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	51.843746	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	52.040329	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	65.481056	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	70.627914		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	47.506462		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	47.653282		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	142.803818		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	87.950821		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	128.329666		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	99.37664		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	89.741821		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	103.800797		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	37.74284	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	46.084198	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	47.808857	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	136.498444	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	93.439201	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	58.621483	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	60.406582	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	138.198395	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	58.505001	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	72.544006	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	73.345406	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	68.980537	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg21837, jg24141
Aizoaceae	Mesembryanthemum crystallinum	2	gene_21997, gene_25727
Amaranthaceae	Atriplex hortensis	2	Ah017444, Ah037695
Amaranthaceae	Beta vulgaris	1	BVRB_8g185480
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg40216, Sbi_jg50198, Sbi_jg59709
Amaranthaceae	Salicornia europaea	2	Seu_jg1800, Seu_jg24165
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00011386, GOSA_00019713
Amaranthaceae	Suaeda glauca	4	Sgl41603, Sgl46398, Sgl78645, Sgl81137
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000010848, gene:ENSEOMG00000016190 ... gene:ENSEOMG00000034258, gene:ENSEOMG00000038347, gene:ENSEOMG00000047886, gene:ENSEOMG00000050343
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.8AG0001220, CQ.Regalona.r1.8BG0001140 ... CQ.Regalona.r1.9AG0005180, CQ.Regalona.r1.9BG0017070
Anacardiaceae	Pistacia vera	2	pistato.v30018010, pistato.v30068930
Apiaceae	Apium graveolens	2	Ag11G03280, Ag1G01165
Arecaceae	Cocos nucifera	5	COCNU_01G009740, COCNU_08G005030, COCNU_11G000830 ... COCNU_11G008550, contig68290107G000010
Arecaceae	Phoenix dactylifera	2	gene-LOC103705193, gene-LOC103710009
Asparagaceae	Asparagus officinalis	1	AsparagusV1_01.174.V1.1
Asteraceae	Flaveria trinervia	2	Ftri18G33423, Ftri3G05438
Brassicaceae	Arabidopsis thaliana	4	AT3G21660.1, AT4G04210.1, AT4G15410.1, AT4G22150.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10022118m.g.v1.0, Thhalv10025275m.g.v1.0 ... Thhalv10025821m.g.v1.0, Thhalv10028833m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp6g04570.v2.2, Sp7g13580.v2.2, Sp7g20310.v2.2 ... SpUn0110_0010.v2.2
Brassicaceae	Brassica nigra	5	BniB05g014950.2N, BniB05g043820.2N, BniB07g020920.2N ... BniB08g037770.2N, BniB08g048010.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq02G2362
Casuarinaceae	Casuarina glauca	2	Cgl02G2445, Cgl04G1836
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno16g05140
Dunaliellaceae	Dunaliella salina	1	Dusal.0817s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate04g28550, gene.Thate04g29120
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-1038
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG04.2112, evm.TU.LG12.1181
Plantaginaceae	Plantago ovata	3	Pov_00001248, Pov_00005990, Pov_00039072
Plumbaginaceae	Limonium bicolor	3	Lb1G00533, Lb4G22280, Lb4G22982
Poaceae	Echinochloa crus-galli	6	AH06.2380, AH09.1271, BH06.2174, BH09.1381, CH06.2397 ... CH09.1488
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_4AG0314600, gene-QOZ80_4BG0345650 ... gene-QOZ80_6AG0545700, gene-QOZ80_6BG0499160
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0173880.1, HORVU.MOREX.r3.7HG0722350.1
Poaceae	Lolium multiflorum	2	gene-QYE76_035165, gene-QYE76_044413
Poaceae	Oryza coarctata	4	Oco07G007880, Oco08G007800, Oco11G013400, Oco12G013540
Poaceae	Oryza sativa	2	LOC_Os04g39040.1, LOC_Os06g42810.1
Poaceae	Paspalum vaginatum	2	gene-BS78_06G124900, gene-BS78_10G199900
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0401037
Poaceae	Sporobolus alterniflorus	6	Chr10G018530, Chr11G004070, Chr23G011360, Chr25G008510 ... Chr26G008190, Chr30G008370
Poaceae	Thinopyrum elongatum	2	Tel2E01G572300, Tel7E01G659700
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG047920, gene_TRIDC2BG050410 ... gene_TRIDC7AG054300, gene_TRIDC7BG046940
Poaceae	Triticum aestivum	6	TraesCS2A02G335700.1, TraesCS2B02G346200.1 ... TraesCS2D02G327100.1, TraesCS7A02G390200.1, TraesCS7B02G291800.1, TraesCS7D02G385900.1
Poaceae	Zea mays	3	Zm00001eb080480_P001, Zm00001eb387510_P001 ... Zm00001eb424420_P001
Poaceae	Zoysia japonica	5	nbis-gene-40950, nbis-gene-53722, nbis-gene-53723 ... nbis-gene-7477, nbis-gene-9971
Poaceae	Zoysia macrostachya	4	Zma_g19860, Zma_g21414, Zma_g30854, Zma_g33108
Portulacaceae	Portulaca oleracea	4	evm.TU.LG01.1931, evm.TU.LG14.1112, evm.TU.LG18.926 ... evm.TU.LG20.946
Posidoniaceae	Posidonia oceanica	1	gene.Posoc01g14400
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_12_RagTag.1033 ... evm.TU.Scaffold_9_RagTag.1372
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-20394, nbisL1-mrna-20507, nbisL1-mrna-23976
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-4185, nbisL1-mrna-756
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-21370, nbisL1-mrna-21728
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000003l.858, evm.TU.utg000027l.13
Rhizophoraceae	Kandelia obovata	2	Maker00009889, Maker00017462
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-10725, nbisL1-mrna-1202
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-23304, nbisL1-mrna-4697
Salicaceae	Populus euphratica	4	populus_peu10406, populus_peu10407, populus_peu18431 ... populus_peu26990
Solanaceae	Lycium barbarum	2	gene-LOC132620395, gene-LOC132622247
Solanaceae	Solanum chilense	3	SOLCI000730100, SOLCI004063200, SOLCI006161900
Solanaceae	Solanum pennellii	3	gene-LOC107011946, gene-LOC107020406, gene-LOC107023986
Tamaricaceae	Reaumuria soongarica	2	STRG.30410_chr10_-, gene_16648
Tamaricaceae	Tamarix chinensis	2	TC07G1605, TC08G0148
Zosteraceae	Zostera marina	1	Zosma01g28490.v3.1