halophFGD

Basic Information

Locus ID: Ag1G01159

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: chitin elicitor receptor kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	169434837	169439245	-	Ag1G01159

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.28	68,546.60 Da	30.83	90.71	-0.10

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	323	591	2.7E-44	IPR001245
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	300	592	6.2E-75	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	392	614	1.4E-55	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	301	391	3.2E-25	-
SMART	SM00220	serkin_6	321	594	7.6E-37	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	321	596	38.689716	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	437	449	-	IPR008271
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	327	349	-	IPR017441

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K13429 (chitin elicitor receptor kinase 1)

Pathway:

ko04626 (Plant-pathogen interaction) map04626 (Plant-pathogen interaction)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G21630.1	chitin elicitor receptor kinase 1. LysM receptor-like kinase. Essential in the perception and transduction of the chitin oligosaccharide elicitor. Involved in chitin-mediated plant innate immunity. Located in the plasma membrane.
RefSeq	XP_017227050.1	PREDICTED: chitin elicitor receptor kinase 1-like [Daucus carota subsp. sativus]
Swiss-Prot	Q6UD73	LysM domain receptor-like kinase 3 OS=Medicago truncatula OX=3880 GN=LYK3 PE=1 SV=1
TrEMBL	A0A8M8V617	lysM domain receptor-like kinase 3 isoform X4 OS=Sesamum indicum OX=4182 GN=LOC105168606 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	3.832522	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	1.486363	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.327643	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	1.261303	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.570503	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.624084	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.124112	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.681166	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	21.079723	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	20.800518	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	23.638332	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	12.548431	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	21.876108	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	14.099095	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	20.531984	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	17.79418	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	13.491801	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	42.818382	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	20.345566	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	47.26133	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	62.113586	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	15.660174	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	11.042834	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	14.332359	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	19.572979	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	18.595188	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	19.104219	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	18.225138	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	9.549951	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	8.07235		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	8.903939		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	9.97999		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	23.690134		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	23.35084		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	32.819962		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	34.539505		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	12.989641		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	21.426655		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	11.162936	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	23.161253	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	11.642323	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	97.920433	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	70.281357	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	47.636364	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	46.38623	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	109.505432	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	60.542088	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	25.352272	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	27.882317	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	35.81879	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg24149, jg24150, jg24784, jg24787, jg24788
Aizoaceae	Mesembryanthemum crystallinum	3	gene_13154, gene_14558, gene_15256
Amaranthaceae	Atriplex hortensis	3	Ah003109, Ah031413, Ah034497
Amaranthaceae	Beta vulgaris	4	BVRB_2g034370, BVRB_5g108610, BVRB_5g108620, BVRB_7g157730
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg15738, Sbi_jg15739, Sbi_jg19818, Sbi_jg23500 ... Sbi_jg317, Sbi_jg4701, Sbi_jg56530
Amaranthaceae	Salicornia europaea	3	Seu_jg13754, Seu_jg17250, Seu_jg17258
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00001823, GOSA_00001824, GOSA_00005968, GOSA_00028112
Amaranthaceae	Suaeda glauca	6	Sgl51449, Sgl56737, Sgl63653, Sgl68151, Sgl71019, Sgl74610
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000005257, gene:ENSEOMG00000006962 ... gene:ENSEOMG00000019556, gene:ENSEOMG00000020960, gene:ENSEOMG00000020984, gene:ENSEOMG00000021063, gene:ENSEOMG00000022158, gene:ENSEOMG00000024247, gene:ENSEOMG00000048467
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.2AG0014040, CQ.Regalona.r1.2BG0016000 ... CQ.Regalona.r1.5BG0011700, CQ.Regalona.r1.7AG0022160, CQ.Regalona.r1.7BG0024740
Anacardiaceae	Pistacia vera	5	pistato.v30018080, pistato.v30068600, pistato.v30068790 ... pistato.v30068800, pistato.v30068810
Apiaceae	Apium graveolens	9	Ag11G03283, Ag1G01149, Ag1G01159, Ag3G00003, Ag3G00004 ... Ag3G00804, Ag5G01198, Ag8G01136, Ag8G01137
Arecaceae	Cocos nucifera	4	COCNU_02G009440, COCNU_15G005930, COCNU_15G005950 ... scaffold151236G000010
Arecaceae	Phoenix dactylifera	4	gene-LOC103698741, gene-LOC103699816, gene-LOC103712380 ... gene-LOC120107592
Asparagaceae	Asparagus officinalis	2	AsparagusV1_04.1572.V1.1, AsparagusV1_09.1579.V1.1
Asteraceae	Flaveria trinervia	5	Ftri12G15261, Ftri14G28595, FtriNA11225, FtriNA21839 ... FtriNA25937
Brassicaceae	Arabidopsis thaliana	1	AT3G21630.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10020310m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp3g19650.v2.2
Brassicaceae	Brassica nigra	1	BniB01g041530.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G2371, Ceq02G2373, Ceq04G1652
Casuarinaceae	Casuarina glauca	2	Cgl02G2452, Cgl04G1827
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno07g08320, gene.Cymno07g08330
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g10650
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG04.2106
Plantaginaceae	Plantago ovata	5	Pov_00001237, Pov_00005981, Pov_00005982, Pov_00005983 ... Pov_00005984
Plumbaginaceae	Limonium bicolor	4	Lb2G10353, Lb2G10354, Lb5G29098, Lb7G34504
Poaceae	Echinochloa crus-galli	6	AH03.2545, AH08.2218, BH03.2696, BH08.2347, CH03.2900 ... CH08.2522
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_6AG0541240, gene-QOZ80_8AG0638420 ... gene-QOZ80_8BG0667510, gene-QOZ80_8BG0667520
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.6HG0633710.1.CDS1 ... HORVU.MOREX.r3.6HG0633720.1, HORVU.MOREX.r3.7HG0685350.1, HORVU.MOREX.r3.7HG0685360.1
Poaceae	Lolium multiflorum	2	gene-QYE76_030351, gene-QYE76_030352
Poaceae	Oryza coarctata	3	Oco15G009660, Oco16G012770, Oco17G009100
Poaceae	Oryza sativa	2	LOC_Os08g42580.1, LOC_Os09g33630.2
Poaceae	Paspalum vaginatum	4	gene-BS78_02G237500, gene-BS78_02G237600 ... gene-BS78_07G207700, gene-BS78_07G207800
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0403548
Poaceae	Sporobolus alterniflorus	5	Chr10G015390, Chr11G006930, Chr20G002240, Chr29G001170 ... Chr29G001180
Poaceae	Thinopyrum elongatum	3	Tel6E01G777600, Tel6E01G780300, Tel7E01G463300
Poaceae	Triticum dicoccoides	6	gene_TRIDC6AG061240, gene_TRIDC6AG061330 ... gene_TRIDC6BG068800, gene_TRIDC6BG068830, gene_TRIDC7AG034480, gene_TRIDC7BG025660
Poaceae	Triticum aestivum	7	TraesCS6A02G417900.1, TraesCS6B02G471100.1 ... TraesCS6B02G471400.1, TraesCS6D02G403200.1, TraesCS7A02G264400.1, TraesCS7B02G162500.1, TraesCS7D02G265400.1
Poaceae	Zea mays	2	Zm00001eb037080_P001, Zm00001eb318070_P002
Poaceae	Zoysia japonica	4	nbis-gene-10331, nbis-gene-17552, nbis-gene-26179 ... nbis-gene-42736
Poaceae	Zoysia macrostachya	3	Zma_g23342, Zma_g24452, Zma_g30616
Portulacaceae	Portulaca oleracea	9	evm.TU.LG04.2773, evm.TU.LG04.2774, evm.TU.LG05.953 ... evm.TU.LG07.919, evm.TU.LG15.826, evm.TU.LG16.895, evm.TU.LG16.896, evm.TU.LG16.897, evm.TU.LG25.384
Posidoniaceae	Posidonia oceanica	2	gene.Posoc05g14700, gene.Posoc05g14710
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_12_RagTag.1024 ... evm.TU.Scaffold_5_RagTag.1542, evm.TU.Scaffold_9_RagTag.1366, evm.TU.Scaffold_9_RagTag.1367
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-12029, nbisL1-mrna-20399, nbisL1-mrna-20501 ... nbisL1-mrna-23973
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-11989, nbisL1-mrna-750, nbisL1-mrna-9845
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-10961, nbisL1-mrna-21365, nbisL1-mrna-21366 ... nbisL1-mrna-21722
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000027l.8, evm.TU.utg000003l.855 ... evm.TU.utg000006l.887, evm.TU.utg000006l.888
Rhizophoraceae	Kandelia obovata	1	Maker00013486
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-10416, nbisL1-mrna-10417, nbisL1-mrna-20988
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-15485
Salicaceae	Populus euphratica	3	populus_peu16421, populus_peu18442, populus_peu26996
Solanaceae	Lycium barbarum	7	gene-LOC132619342, gene-LOC132619343, gene-LOC132621577 ... gene-LOC132621856, gene-LOC132622436, gene-LOC132622665, gene-LOC132645194
Solanaceae	Solanum chilense	4	SOLCI002883400, SOLCI003381000, SOLCI003904200 ... SOLCI006810400
Solanaceae	Solanum pennellii	4	gene-LOC107010402, gene-LOC107010613, gene-LOC107012101 ... gene-LOC107025340
Tamaricaceae	Reaumuria soongarica	2	STRG.25840_chr11_+, gene_2451
Tamaricaceae	Tamarix chinensis	2	TC03G1390, TC08G0135
Zosteraceae	Zostera marina	4	Zosma05g02860.v3.1, Zosma05g02870.v3.1, Zosma05g02890.v3.1 ... Zosma05g02900.v3.1