halophFGD

Basic Information

Locus ID: Ag1G01149

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: chitin elicitor receptor kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	169140668	169146282	+	Ag1G01149

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.61	67,795.62 Da	34.06	88.57	-0.04

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	307	520	3.1E-43	IPR001245
Pfam	PF01476	LysM domain	46	82	0.049	IPR018392
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	280	582	3.91E-73	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	283	373	1.1E-24	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	374	593	1.0E-53	-
SMART	SM00220	serkin_6	303	586	6.3E-34	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	303	585	38.604912	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	419	431	-	IPR008271
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	309	331	-	IPR017441

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K13429 (chitin elicitor receptor kinase 1)

Pathway:

ko04626 (Plant-pathogen interaction) map04626 (Plant-pathogen interaction)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G21630.1	chitin elicitor receptor kinase 1. LysM receptor-like kinase. Essential in the perception and transduction of the chitin oligosaccharide elicitor. Involved in chitin-mediated plant innate immunity. Located in the plasma membrane.
RefSeq	XP_017225732.1	PREDICTED: lysM domain receptor-like kinase 3 isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q6UD73	LysM domain receptor-like kinase 3 OS=Medicago truncatula OX=3880 GN=LYK3 PE=1 SV=1
TrEMBL	A0A5J4ZE13	Protein kinase domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_018848 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.260077	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.305015	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.357058	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.162907	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.473957	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.434779	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.178206	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	1.912818	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.362245	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	1.629377	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.61171	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	2.352741	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	1.241569	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.44378	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.430719	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.345227	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	5.838143	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	1.19693	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	12.054967	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	11.421329	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.022418	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.03561	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.068149	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.68399	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.524435	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.271667	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.089398	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.447153	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.143962		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.310536		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.350877		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.134846		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	2.013906		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.453301		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.428766		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.878172	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	14.802615	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	5.636567	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	23.093063	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	18.885237	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	1.718188	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	1.009617	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	14.742105	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	2.402622	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.91838	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	1.081396	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.422714	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg24149, jg24150, jg24784, jg24787, jg24788
Aizoaceae	Mesembryanthemum crystallinum	3	gene_13154, gene_14558, gene_15256
Amaranthaceae	Atriplex hortensis	3	Ah003109, Ah031413, Ah034497
Amaranthaceae	Beta vulgaris	4	BVRB_2g034370, BVRB_5g108610, BVRB_5g108620, BVRB_7g157730
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg15738, Sbi_jg15739, Sbi_jg19818, Sbi_jg23500 ... Sbi_jg317, Sbi_jg4701, Sbi_jg56530
Amaranthaceae	Salicornia europaea	3	Seu_jg13754, Seu_jg17250, Seu_jg17258
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00001823, GOSA_00001824, GOSA_00005968, GOSA_00028112
Amaranthaceae	Suaeda glauca	6	Sgl51449, Sgl56737, Sgl63653, Sgl68151, Sgl71019, Sgl74610
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000005257, gene:ENSEOMG00000006962 ... gene:ENSEOMG00000019556, gene:ENSEOMG00000020960, gene:ENSEOMG00000020984, gene:ENSEOMG00000021063, gene:ENSEOMG00000022158, gene:ENSEOMG00000024247, gene:ENSEOMG00000048467
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.2AG0014040, CQ.Regalona.r1.2BG0016000 ... CQ.Regalona.r1.5BG0011700, CQ.Regalona.r1.7AG0022160, CQ.Regalona.r1.7BG0024740
Anacardiaceae	Pistacia vera	5	pistato.v30018080, pistato.v30068600, pistato.v30068790 ... pistato.v30068800, pistato.v30068810
Apiaceae	Apium graveolens	9	Ag11G03283, Ag1G01149, Ag1G01159, Ag3G00003, Ag3G00004 ... Ag3G00804, Ag5G01198, Ag8G01136, Ag8G01137
Arecaceae	Cocos nucifera	4	COCNU_02G009440, COCNU_15G005930, COCNU_15G005950 ... scaffold151236G000010
Arecaceae	Phoenix dactylifera	4	gene-LOC103698741, gene-LOC103699816, gene-LOC103712380 ... gene-LOC120107592
Asparagaceae	Asparagus officinalis	2	AsparagusV1_04.1572.V1.1, AsparagusV1_09.1579.V1.1
Asteraceae	Flaveria trinervia	5	Ftri12G15261, Ftri14G28595, FtriNA11225, FtriNA21839 ... FtriNA25937
Brassicaceae	Arabidopsis thaliana	1	AT3G21630.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10020310m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp3g19650.v2.2
Brassicaceae	Brassica nigra	1	BniB01g041530.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G2371, Ceq02G2373, Ceq04G1652
Casuarinaceae	Casuarina glauca	2	Cgl02G2452, Cgl04G1827
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno07g08320, gene.Cymno07g08330
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g10650
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG04.2106
Plantaginaceae	Plantago ovata	5	Pov_00001237, Pov_00005981, Pov_00005982, Pov_00005983 ... Pov_00005984
Plumbaginaceae	Limonium bicolor	4	Lb2G10353, Lb2G10354, Lb5G29098, Lb7G34504
Poaceae	Echinochloa crus-galli	6	AH03.2545, AH08.2218, BH03.2696, BH08.2347, CH03.2900 ... CH08.2522
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_6AG0541240, gene-QOZ80_8AG0638420 ... gene-QOZ80_8BG0667510, gene-QOZ80_8BG0667520
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.6HG0633710.1.CDS1 ... HORVU.MOREX.r3.6HG0633720.1, HORVU.MOREX.r3.7HG0685350.1, HORVU.MOREX.r3.7HG0685360.1
Poaceae	Lolium multiflorum	2	gene-QYE76_030351, gene-QYE76_030352
Poaceae	Oryza coarctata	3	Oco15G009660, Oco16G012770, Oco17G009100
Poaceae	Oryza sativa	2	LOC_Os08g42580.1, LOC_Os09g33630.2
Poaceae	Paspalum vaginatum	4	gene-BS78_02G237500, gene-BS78_02G237600 ... gene-BS78_07G207700, gene-BS78_07G207800
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0403548
Poaceae	Sporobolus alterniflorus	5	Chr10G015390, Chr11G006930, Chr20G002240, Chr29G001170 ... Chr29G001180
Poaceae	Thinopyrum elongatum	3	Tel6E01G777600, Tel6E01G780300, Tel7E01G463300
Poaceae	Triticum dicoccoides	6	gene_TRIDC6AG061240, gene_TRIDC6AG061330 ... gene_TRIDC6BG068800, gene_TRIDC6BG068830, gene_TRIDC7AG034480, gene_TRIDC7BG025660
Poaceae	Triticum aestivum	7	TraesCS6A02G417900.1, TraesCS6B02G471100.1 ... TraesCS6B02G471400.1, TraesCS6D02G403200.1, TraesCS7A02G264400.1, TraesCS7B02G162500.1, TraesCS7D02G265400.1
Poaceae	Zea mays	2	Zm00001eb037080_P001, Zm00001eb318070_P002
Poaceae	Zoysia japonica	4	nbis-gene-10331, nbis-gene-17552, nbis-gene-26179 ... nbis-gene-42736
Poaceae	Zoysia macrostachya	3	Zma_g23342, Zma_g24452, Zma_g30616
Portulacaceae	Portulaca oleracea	9	evm.TU.LG04.2773, evm.TU.LG04.2774, evm.TU.LG05.953 ... evm.TU.LG07.919, evm.TU.LG15.826, evm.TU.LG16.895, evm.TU.LG16.896, evm.TU.LG16.897, evm.TU.LG25.384
Posidoniaceae	Posidonia oceanica	2	gene.Posoc05g14700, gene.Posoc05g14710
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_12_RagTag.1024 ... evm.TU.Scaffold_5_RagTag.1542, evm.TU.Scaffold_9_RagTag.1366, evm.TU.Scaffold_9_RagTag.1367
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-12029, nbisL1-mrna-20399, nbisL1-mrna-20501 ... nbisL1-mrna-23973
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-11989, nbisL1-mrna-750, nbisL1-mrna-9845
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-10961, nbisL1-mrna-21365, nbisL1-mrna-21366 ... nbisL1-mrna-21722
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000027l.8, evm.TU.utg000003l.855 ... evm.TU.utg000006l.887, evm.TU.utg000006l.888
Rhizophoraceae	Kandelia obovata	1	Maker00013486
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-10416, nbisL1-mrna-10417, nbisL1-mrna-20988
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-15485
Salicaceae	Populus euphratica	3	populus_peu16421, populus_peu18442, populus_peu26996
Solanaceae	Lycium barbarum	7	gene-LOC132619342, gene-LOC132619343, gene-LOC132621577 ... gene-LOC132621856, gene-LOC132622436, gene-LOC132622665, gene-LOC132645194
Solanaceae	Solanum chilense	4	SOLCI002883400, SOLCI003381000, SOLCI003904200 ... SOLCI006810400
Solanaceae	Solanum pennellii	4	gene-LOC107010402, gene-LOC107010613, gene-LOC107012101 ... gene-LOC107025340
Tamaricaceae	Reaumuria soongarica	2	STRG.25840_chr11_+, gene_2451
Tamaricaceae	Tamarix chinensis	2	TC03G1390, TC08G0135
Zosteraceae	Zostera marina	4	Zosma05g02860.v3.1, Zosma05g02870.v3.1, Zosma05g02890.v3.1 ... Zosma05g02900.v3.1