Basic Information
Locus ID:
Ag1G01147
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 169082113 | 169089071 | + | Ag1G01147 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 79,999.54 Da | 43.44 | 82.04 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00693 | secretory_peroxidase | 424 | 716 | 3.03687E-174 | IPR033905 |
| Pfam | PF00646 | F-box domain | 15 | 55 | 1.7E-4 | IPR001810 |
| Pfam | PF00141 | Peroxidase | 442 | 684 | 2.0E-73 | IPR002016 |
| Pfam | PF07734 | F-box associated | 228 | 337 | 5.7E-6 | IPR006527 |
| SUPERFAMILY | SSF48113 | Heme-dependent peroxidases | 424 | 717 | 5.3E-102 | IPR010255 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 72 | 2.09E-10 | IPR036047 |
| Gene3D | G3DSA:1.10.420.10 | Peroxidase, domain 2 | 559 | 700 | 6.2E-116 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 9 | 58 | 3.8E-8 | - |
| Gene3D | G3DSA:1.10.520.10 | - | 427 | 717 | 6.2E-116 | - |
| SMART | SM00256 | fbox_2 | 19 | 58 | 2.2E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 116 | 334 | 3.2E-21 | IPR017451 |
| ProSiteProfiles | PS50873 | Plant heme peroxidase family profile. | 423 | 717 | 75.058372 | IPR002016 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 13 | 64 | 11.775988 | IPR001810 |
| ProSitePatterns | PS00435 | Peroxidases proximal heme-ligand signature. | 581 | 591 | - | IPR019793 |
| PRINTS | PR00461 | Plant peroxidase signature | 695 | 708 | 1.0E-45 | IPR000823 |
| PRINTS | PR00461 | Plant peroxidase signature | 639 | 654 | 1.0E-45 | IPR000823 |
| PRINTS | PR00461 | Plant peroxidase signature | 515 | 525 | 1.0E-45 | IPR000823 |
| PRINTS | PR00461 | Plant peroxidase signature | 580 | 592 | 1.0E-45 | IPR000823 |
| PRINTS | PR00461 | Plant peroxidase signature | 457 | 477 | 1.0E-45 | IPR000823 |
| PRINTS | PR00461 | Plant peroxidase signature | 534 | 549 | 1.0E-45 | IPR000823 |
| PRINTS | PR00458 | Haem peroxidase superfamily signature | 534 | 546 | 7.5E-29 | IPR002016 |
| PRINTS | PR00458 | Haem peroxidase superfamily signature | 455 | 469 | 7.5E-29 | IPR002016 |
| PRINTS | PR00458 | Haem peroxidase superfamily signature | 516 | 533 | 7.5E-29 | IPR002016 |
| PRINTS | PR00458 | Haem peroxidase superfamily signature | 641 | 656 | 7.5E-29 | IPR002016 |
| PRINTS | PR00458 | Haem peroxidase superfamily signature | 581 | 596 | 7.5E-29 | IPR002016 |
| PRINTS | PR00461 | Plant peroxidase signature | 433 | 452 | 1.0E-45 | IPR000823 |
| PRINTS | PR00461 | Plant peroxidase signature | 655 | 672 | 1.0E-45 | IPR000823 |
| PRINTS | PR00461 | Plant peroxidase signature | 496 | 509 | 1.0E-45 | IPR000823 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42180.1 | Peroxidase superfamily protein. | 0 |
| RefSeq | XP_017224000.1 | PREDICTED: F-box protein At4g22390-like [Daucus carota subsp. sativus] | 0 |
| Q43872 | Peroxidase 64 OS=Arabidopsis thaliana OX=3702 GN=PER64 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6L5BA39 | F-box domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_010845 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 28.881472 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 45.028492 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 73.028389 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 96.406601 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 91.458618 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 14.562387 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 12.875492 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.645148 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 55.400944 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 52.994827 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 64.959946 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 77.08712 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 44.765072 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 45.999203 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.872326 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.481377 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.517713 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 3.765348 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.979296 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.893416 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.475274 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 11.228095 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 5.578942 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 10.199435 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.38436 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 7.056818 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.581091 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.487012 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.551949 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.54855 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.693176 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.18295 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.048912 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.2634 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.460167 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.479 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.621266 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.877982 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 7.760193 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.579618 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.810074 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.172481 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.41361 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 5.473104 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.406624 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.300925 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 5.392535 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 7.927108 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.164089 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 2.294049 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg10151, jg32987, jg34007, jg6374 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_16856, gene_3165, gene_3166 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah018997, Ah018999, Ah019000, Ah027228 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g134170 |
| Amaranthaceae | Salicornia bigelovii | 13 | Sbi_jg12619, Sbi_jg12620, Sbi_jg15459, Sbi_jg15462 ... |
| Amaranthaceae | Salicornia europaea | 5 | Seu_jg26741, Seu_jg26745, Seu_jg26747, Seu_jg8598 ... |
| Amaranthaceae | Suaeda aralocaspica | 7 | GOSA_00004237, GOSA_00006617, GOSA_00006618, GOSA_00006619 ... |
| Amaranthaceae | Suaeda glauca | 11 | Sgl02076, Sgl02077, Sgl07229, Sgl07230, Sgl07231, Sgl12449 ... |
| Amaranthaceae | Chenopodium album | 8 | gene:ENSEOMG00000002066, gene:ENSEOMG00000002084 ... |
| Amaranthaceae | Chenopodium quinoa | 9 | CQ.Regalona.r1.3AG0002080, CQ.Regalona.r1.3AG0002090 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30049000, pistato.v30182020, pistato.v30211420 |
| Apiaceae | Apium graveolens | 2 | Ag1G01147, Ag4G01841 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G008930 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103718926, gene-LOC103722765 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2550.V1.1 |
| Asteraceae | Flaveria trinervia | 8 | Ftri17G13314, Ftri18G23195, Ftri18G29385, Ftri1G12150 ... |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G42180.1, AT5G51890.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10014117m.g.v1.0, Thhalv10027848m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g14150.v2.2, Sp7g08620.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g029390.2N, BniB02g059770.2N, BniB03g064030.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq02G2063, Ceq03G0838, Ceq06G0120 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl02G2133, Cgl03G0912, Cgl06G0132 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g00580 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10448 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG01.2224, evm.TU.LG01.2225, evm.TU.LG06.166 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00003474, Pov_00020632, Pov_00040888, Pov_00040890 |
| Plumbaginaceae | Limonium bicolor | 8 | Lb1G04392, Lb1G04394, Lb1G04434, Lb1G04435, Lb1G04437 ... |
| Poaceae | Echinochloa crus-galli | 3 | AH07.4065, CH07.3941, Contig1026.7 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0151810, gene-QOZ80_2BG0207190 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_051382, gene-QYE76_051383 |
| Poaceae | Oryza coarctata | 2 | Oco03G026450, Oco04G026840 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g58720.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G331700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0300074 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr15G000020 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G788100, Tel3E01G003500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG066170, gene_TRIDC2BG071340 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G467000.1.cds1, TraesCS2B02G489800.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb240670_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-8228 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14776 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.1496, evm.TU.LG11.1576, evm.TU.LG12.158 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc06g09020, gene.Posoc08g05580 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.1317 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12626, nbisL1-mrna-9102 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-18558, nbisL1-mrna-20477 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12894, nbisL1-mrna-15340, nbisL1-mrna-15341 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000010l.338, evm.TU.utg000018l.439 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003067, Maker00008812 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1041, nbisL1-mrna-3311 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11157, nbisL1-mrna-20641 |
| Salicaceae | Populus euphratica | 3 | populus_peu14089, populus_peu29233, populus_peu33040 |
| Solanaceae | Lycium barbarum | 8 | gene-LOC132602573, gene-LOC132604169, gene-LOC132621978 ... |
| Solanaceae | Solanum chilense | 5 | SOLCI004380800, SOLCI005347500, SOLCI006234400 ... |
| Solanaceae | Solanum pennellii | 5 | gene-LOC107006734, gene-LOC107009520, gene-LOC107010550 ... |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_2500, gene_3090, gene_4120 |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G2471, TC05G0301, TC06G1760 |
| Zosteraceae | Zostera marina | 1 | Zosma05g31120.v3.1 |