halophFGD

Basic Information

Locus ID: Ag1G01146

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: DNA-directed RNA

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	169025846	169026568	-	Ag1G01146

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.77	26,791.60 Da	39.78	90.17	-0.26

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF05158	RNA polymerase Rpc34 subunit	26	131	1.8E-24	IPR007832
SUPERFAMILY	SSF46785	Winged helix DNA-binding domain	21	89	7.08E-9	IPR036390
Gene3D	G3DSA:1.10.10.10	-	1	82	3.1E-13	IPR036388

Gene Ontology

Biological Process:

GO:0006383 (transcription by RNA polymerase III)

Cellular Component:

GO:0005666 (RNA polymerase III complex)

KEGG Pathway

KO Term:

K03025 (DNA-directed RNA polymerase III subunit RPC6)

Pathway:

ko00230 (Purine metabolism) map00230 (Purine metabolism) ko00240 (Pyrimidine metabolism) map00240 (Pyrimidine metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko03020 (RNA polymerase) map03020 (RNA polymerase) map04623 (Cytosolic DNA-sensing pathway)

Reaction:

R00435 (ATP + RNA <=> Diphosphate + RNA) R00441 (GTP + RNA <=> Diphosphate + RNA) R00442 (CTP + RNA <=> Diphosphate + RNA) R00443 (UTP + RNA <=> Diphosphate + RNA)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G23710.1	DNA binding;DNA-directed RNA polymerases.
RefSeq	XP_017223786.1	PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q921X6	DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus OX=10090 GN=Polr3f PE=1 SV=1
TrEMBL	A0A175YKF7	DNA-directed RNA polymerase III subunit RPC6 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030901 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.379533	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.098009	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.06488	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.083464		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.875923		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.004233	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.304189	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg36957, jg5577
Aizoaceae	Mesembryanthemum crystallinum	2	gene_19264, gene_622
Amaranthaceae	Beta vulgaris	1	BVRB_5g121860
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg31325, Sbi_jg57961
Amaranthaceae	Salicornia europaea	1	Seu_jg25586
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00004474
Amaranthaceae	Suaeda glauca	2	Sgl54529, Sgl59870
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000006201, gene:ENSEOMG00000021214 ... gene:ENSEOMG00000023247
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.4AG0009560, CQ.Regalona.r1.5BG0028630
Anacardiaceae	Pistacia vera	1	pistato.v30127940
Apiaceae	Apium graveolens	2	Ag1G01146, Ag9G01580
Arecaceae	Cocos nucifera	2	scaffold010820G000020, scaffold012968G000010
Arecaceae	Phoenix dactylifera	1	gene-LOC103724044
Asparagaceae	Asparagus officinalis	1	AsparagusV1_09.1360.V1.1
Asteraceae	Flaveria trinervia	1	Ftri14G23041
Brassicaceae	Arabidopsis thaliana	1	AT5G23710.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10005351m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp2g23520.v2.2
Brassicaceae	Brassica nigra	2	BniB02g076810.2N, BniB07g040580.2N
Casuarinaceae	Casuarina glauca	1	Cgl02G0311
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno07g12140
Dunaliellaceae	Dunaliella salina	1	Dusal.0099s00005.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate01g21500
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.463
Plantaginaceae	Plantago ovata	2	Pov_00003140, Pov_00013573
Poaceae	Echinochloa crus-galli	6	AH06.2225, AH06.2226, BH06.2009, BH06.2010, CH06.2249 ... CH06.2250
Poaceae	Eleusine coracana subsp. coracana	1	gene-QOZ80_6BG0497900
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.7HG0719600.1.CDS1 ... HORVU.MOREX.r3.7HG0719610.1.CDS1, HORVU.MOREX.r3.7HG0719640.1
Poaceae	Lolium multiflorum	1	gene-QYE76_034960
Poaceae	Oryza coarctata	1	Oco12G012520
Poaceae	Oryza sativa	1	LOC_Os06g40110.1
Poaceae	Paspalum vaginatum	2	gene-BS78_10G184000, gene-BS78_10G184400
Poaceae	Sporobolus alterniflorus	3	Chr02G029820, Chr05G007490, Chr0G008060
Poaceae	Thinopyrum elongatum	2	Tel7E01G637700, Tel7E01G637800
Poaceae	Triticum dicoccoides	3	gene_TRIDC7AG052520, gene_TRIDC7BG044950 ... gene_TRIDC7BG044960
Poaceae	Triticum aestivum	4	TraesCS7A02G376000.1, TraesCS7A02G376100.1 ... TraesCS7B02G277600.1.cds1, TraesCS7D02G372500.1.cds1
Poaceae	Zea mays	3	Zm00001eb276730_P001, Zm00001eb356740_P001 ... Zm00001eb386260_P001
Poaceae	Zoysia japonica	1	nbis-gene-10090
Poaceae	Zoysia macrostachya	1	Zma_g30783
Portulacaceae	Portulaca oleracea	1	evm.TU.LG09.1261
Posidoniaceae	Posidonia oceanica	2	gene.Posoc05g03170, gene.Posoc05g03210
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_10_RagTag.1182
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-14684, nbisL1-mrna-6818
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-14849
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-21751
Rhizophoraceae	Kandelia candel	1	add.evm.TU.utg000004l.134
Rhizophoraceae	Kandelia obovata	1	Maker00004087
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-16335
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-21384
Salicaceae	Populus euphratica	5	populus_peu04478, populus_peu04517, populus_peu04536 ... populus_peu12129, populus_peu35292
Solanaceae	Lycium barbarum	3	gene-LOC132602065, gene-LOC132610636, gene-LOC132621960
Solanaceae	Solanum chilense	1	SOLCI001877000
Solanaceae	Solanum pennellii	1	gene-LOC107026877
Tamaricaceae	Reaumuria soongarica	2	STRG.19266_chr07_-, gene_16144
Tamaricaceae	Tamarix chinensis	2	TC05G1029, TC09G0526
Zosteraceae	Zostera marina	1	Zosma05g05360.v3.1