halophFGD

Basic Information

Locus ID: Ag1G01144

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: F-Box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	168720820	168728156	-	Ag1G01144

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.56	28,544.47 Da	27.40	80.67	-0.22

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	1	186	2.7E-15	IPR017451

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_017224000.1	PREDICTED: F-box protein At4g22390-like [Daucus carota subsp. sativus]	0
TrEMBL	A0A6L5BAU5	F-box domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_010846 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	7.666522	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	6.874554	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	3.542521	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	4.683358	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	5.294806	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	4.717773	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	2.864645	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.709113	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	2.835884	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	4.196807	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	4.325256	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	6.018919	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	4.164777	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	3.78666	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.50559	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	2.642834	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	4.063207	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	1.906843	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	2.964006	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	1.474567	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	1.603128	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	5.19437	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	8.645712	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	6.992734	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	5.789703	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	5.483782	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	5.175672	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	4.843029	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	8.407222	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.514613		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.17231		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.295282		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	4.358392		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	5.217317		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	4.510346		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	2.491226		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.834891		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	2.77763		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	3.837591	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	2.100425	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.559995	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.4802	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.312139	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	1.479727	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	2.891472	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.472772	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	3.195836	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	14.970206	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	17.93891	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	13.45542	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	13	Ag11G04885, Ag1G00830, Ag1G00923, Ag1G01144, Ag3G01205 ... Ag7G00721, Ag7G00723, Ag7G00725, Ag8G01058, Ag8G01686, Ag8G02035, AgUnG00385, AgUnG01320