halophFGD

Basic Information

Locus ID: Ag1G01138

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: NAGK

Description: Amino acid kinase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	168638787	168640159	+	Ag1G01138

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.96	35,951.94 Da	26.27	117.96	0.30

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd04250	AAK_NAGK-C	68	341	1.34304E-139	IPR041727
Pfam	PF00696	Amino acid kinase family	82	319	1.1E-42	IPR001048
SUPERFAMILY	SSF53633	Carbamate kinase-like	63	342	3.4E-84	IPR036393
Gene3D	G3DSA:3.40.1160.10	-	59	343	7.0E-101	IPR036393
TIGRFAM	TIGR00761	argB: acetylglutamate kinase	83	318	8.0E-82	IPR004662
PIRSF	PIRSF000423	ArgA	58	343	1.3E-43	IPR010167
PRINTS	PR00474	Glutamate 5-kinase family signature	240	267	7.1E-7	IPR001057
PRINTS	PR00474	Glutamate 5-kinase family signature	113	127	7.1E-7	IPR001057
PRINTS	PR00474	Glutamate 5-kinase family signature	293	313	7.1E-7	IPR001057
Hamap	MF_00082	Acetylglutamate kinase [argB].	81	336	46.980484	IPR037528

Gene Ontology

Biological Process:

GO:0006526 (L-arginine biosynthetic process)

Molecular Function:

GO:0003991 (acetylglutamate kinase activity) GO:0004042 (L-glutamate N-acetyltransferase activity)

Cellular Component:

GO:0005737 (cytoplasm)

KEGG Pathway

KO Term:

K00930 (acetylglutamate kinase [EC:2.7.2.8])

Pathway:

ko00220 (Arginine biosynthesis) map00220 (Arginine biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01210 (2-Oxocarboxylic acid metabolism) map01210 (2-Oxocarboxylic acid metabolism) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids)

Module:

M00028 (Ornithine biosynthesis, glutamate => ornithine)

Reaction:

R02649 (ATP + N-Acetyl-L-glutamate <=> ADP + N-Acetyl-L-glutamate 5-phosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G57560.1	N-acetyl-l-glutamate kinase. encodes a N-acetylglutamate kinase, involved in arginine biosynthesis
RefSeq	XP_017227197.1	PREDICTED: acetylglutamate kinase-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9SCL7	Acetylglutamate kinase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NAGK PE=1 SV=1
TrEMBL	A0A164WNG5	AA_kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020609 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	17.291456	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	10.004433	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	7.674757	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	11.656903	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	10.690999	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	8.996926	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	9.751127	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	8.772102	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	19.110704	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	17.081568	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	17.419611	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	19.956959	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	19.548042	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	15.393604	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	15.457689	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	17.581362	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	18.96377	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	15.434071	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	15.024428	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	16.563162	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	14.155691	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	17.13835	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	20.651039	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	21.730116	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	19.781904	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	24.995775	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	24.624807	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	21.740881	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	25.331709	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	7.030354		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	12.743682		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	12.954639		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	22.003485		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	13.407857		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	17.40048		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	20.706249		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	14.850099		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	16.029984		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	20.351336	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	11.415096	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	9.424181	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	11.707449	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	8.992715	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	18.587019	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	11.232802	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	19.766882	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	20.134485	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	10.03381	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	6.890258	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	8.737645	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg17175, jg39628
Aizoaceae	Mesembryanthemum crystallinum	1	gene_10382
Amaranthaceae	Atriplex hortensis	1	Ah023053
Amaranthaceae	Beta vulgaris	1	BVRB_1g006010
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg30101, Sbi_jg43552
Amaranthaceae	Salicornia europaea	1	Seu_jg18350
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00000406
Amaranthaceae	Suaeda glauca	2	Sgl11129, Sgl16532
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000016111, gene:ENSEOMG00000035585 ... gene:ENSEOMG00000049012
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.1AG0002570, CQ.Regalona.r1.1AG0005260 ... CQ.Regalona.r1.2BG0024540
Anacardiaceae	Pistacia vera	1	pistato.v30119610
Apiaceae	Apium graveolens	1	Ag1G01138
Arecaceae	Cocos nucifera	5	COCNU_07G009960, COCNU_12G005080, COCNU_15G006200 ... scaffold006799G000060, scaffold008026G000010
Arecaceae	Phoenix dactylifera	2	gene-LOC103703976, gene-LOC103708398
Asparagaceae	Asparagus officinalis	1	AsparagusV1_10.815.V1.1
Asteraceae	Flaveria trinervia	1	Ftri1G20375
Brassicaceae	Arabidopsis thaliana	1	AT3G57560.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10006042m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp5g05030.v2.2
Brassicaceae	Brassica nigra	2	BniB06g063890.2N, BniB08g072290.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq04G2214, Ceq04G2216, Ceq04G2236
Casuarinaceae	Casuarina glauca	4	Cgl04G2411, Cgl04G2413, Cgl04G2431, Cgl04G2433
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno18g03760
Dunaliellaceae	Dunaliella salina	1	Dusal.0374s00005.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate07g02880
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG08.1067
Plantaginaceae	Plantago ovata	4	Pov_00001688, Pov_00021426, Pov_00021428, Pov_00030891
Poaceae	Echinochloa crus-galli	3	AH02.3323, AH09.1828, CH09.2150
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0139750, gene-QOZ80_2BG0195410 ... gene-QOZ80_4AG0308330, gene-QOZ80_4BG0339320
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0189740.1.CDS1 ... HORVU.MOREX.r3.6HG0600870.1.CDS1
Poaceae	Lolium multiflorum	7	gene-QYE76_024162, gene-QYE76_037787, gene-QYE76_037788 ... gene-QYE76_037789, gene-QYE76_037790, gene-QYE76_045377, gene-QYE76_045378
Poaceae	Oryza coarctata	2	Oco04G017930, Oco08G012080
Poaceae	Oryza sativa	2	LOC_Os02g44000.1, LOC_Os04g46460.2
Poaceae	Paspalum vaginatum	2	gene-BS78_04G218300, gene-BS78_06G180700
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0203947, Pt_Chr0301787
Poaceae	Sporobolus alterniflorus	6	Chr09G024340, Chr13G005740, Chr18G010750, Chr23G007140 ... Chr26G012610, Chr30G005780
Poaceae	Thinopyrum elongatum	2	Tel6E01G468900, Tel6E01G771200
Poaceae	Triticum dicoccoides	5	gene_TRIDC2AG059860, gene_TRIDC2BG063340 ... gene_TRIDC3AG057370, gene_TRIDC6AG038590, gene_TRIDC6BG045480
Poaceae	Triticum aestivum	6	TraesCS2A02G414700.1.cds1, TraesCS2B02G433900.1.cds1 ... TraesCS2D02G412000.1.cds1, TraesCS6A02G250600.1.cds1, TraesCS6B02G274800.1.cds1, TraesCS6D02G232400.1.cds1
Poaceae	Zea mays	2	Zm00001eb074610_P001, Zm00001eb186530_P001
Poaceae	Zoysia japonica	4	nbis-gene-22373, nbis-gene-25703, nbis-gene-5488 ... nbis-gene-9269
Poaceae	Zoysia macrostachya	4	Zma_g14048, Zma_g16808, Zma_g21745, Zma_g24698
Portulacaceae	Portulaca oleracea	1	evm.TU.LG13.262
Posidoniaceae	Posidonia oceanica	1	gene.Posoc07g04880
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_8_RagTag.1685
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-19395
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-13852, nbisL1-mrna-19906
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-15019, nbisL1-mrna-18398
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000003l.182, add.evm.TU.utg000018l.3 ... add.evm.TU.utg000018l.4, add.evm.TU.utg000028l.3
Rhizophoraceae	Kandelia obovata	1	Maker00009513
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-19941, nbisL1-mrna-20465
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-22546, nbisL1-mrna-23724
Salicaceae	Populus euphratica	3	populus_peu04527, populus_peu04546, populus_peu13121
Solanaceae	Lycium barbarum	1	gene-LOC132613509
Solanaceae	Solanum chilense	1	SOLCI003688700
Solanaceae	Solanum pennellii	1	gene-LOC107004976
Tamaricaceae	Reaumuria soongarica	2	gene_2463, gene_738
Tamaricaceae	Tamarix chinensis	1	TC08G0178
Zosteraceae	Zostera marina	2	Zosma02g05870.v3.1, Zosma06g08700.v3.1