halophFGD

Basic Information

Locus ID: Ag1G01106

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: F-box domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	167707198	167708931	-	Ag1G01106

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.74	12,189.83 Da	46.42	97.43	-0.11

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF81383	F-box domain	9	67	5.23E-9	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	12	58	4.9E-7	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_017228622.1	PREDICTED: F-box protein CPR30-like, partial [Daucus carota subsp. sativus]	0
TrEMBL	A0A6L5BA39	F-box domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_010845 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.077805	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.088316	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.036466	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.047871	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.052005	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.106159	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.149335	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	1.268633	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.262822	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	1.321757	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.341093	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.667097	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	1.014569	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.216678	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.326501	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.268432	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.128561	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.2351	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.348444	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.381952	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.349412	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.137721	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.12387	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.340643	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.032674	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.174468	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.041061		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.620794		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.330862		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.483728		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	1.278616		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.155438		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.093652		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.071001		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.272217		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.706028	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.084492	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.098345	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.297966	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.088247	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	3.700491	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.340985	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.703606	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.990663	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	1.5891	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	1.396953	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.079615	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	1	Ag1G01106
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.935, evm.TU.LG10.1495
Plantaginaceae	Plantago ovata	1	Pov_00005997