Basic Information
Locus ID:
Ag1G01102
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 167580376 | 167586198 | + | Ag1G01102 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.84 | 59,405.04 Da | 70.30 | 69.46 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 477 | 520 | 4.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 469 | 525 | 1.44E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 441 | 525 | 6.4E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 478 | 519 | 8.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 478 | 520 | 12.725326 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G45290.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017224059.1 | PREDICTED: uncharacterized protein LOC108200430 [Daucus carota subsp. sativus] | 0 |
| Q9LN71 | E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana OX=3702 GN=At1g12760 PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YJR6 | RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030947 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.858205 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.966358 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.15644 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.493556 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.681952 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.796874 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.310588 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.109871 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 18.804405 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 18.222775 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 21.93531 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 23.673307 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 20.410292 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 18.306208 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.301312 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 12.359587 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 12.471997 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 12.157025 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 10.887761 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.913517 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 7.163012 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 14.328425 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 13.568057 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 14.85523 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 12.498398 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 14.04752 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 13.088046 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.258119 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 14.903913 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.279202 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.213304 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.687428 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.639026 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 11.528399 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 5.000417 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.666954 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.582572 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.455992 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 17.154369 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.529343 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.231255 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.618516 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 4.102178 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 4.275018 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 3.383325 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 6.64292 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 5.687808 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 16.51298 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 19.365835 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 17.704351 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg23668, jg36913 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14667 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003531 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g102140 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4654, Sbi_jg7416 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12613 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001363 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51768, Sgl57076 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006532, gene:ENSEOMG00000021051 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0009280, CQ.Regalona.r1.5BG0009650 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30021750 |
| Apiaceae | Apium graveolens | 1 | Ag1G01102 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G015800, scaffold026746G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103713011, gene-LOC120108550, gene-LOC120109972 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.40.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G12916 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G45290.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000852m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g10230.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g062330.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0697 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0871 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g01890 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g05180 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1482 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.474 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003737 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G07665, Lb2G12048 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.2616, BH05.2700, CH01.4749 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0374700 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0058470.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_013579 |
| Poaceae | Oryza coarctata | 2 | Oco09G008640, Oco10G008800 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g32350.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G131300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0505110, Pt_Chr0505451 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr0G003870, Chr0G027380, Chr12G016240, Chr18G008170 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G403200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG036660, gene_TRIDC1BG041650 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G243200.2, TraesCS1B02G254700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb287150_P002, Zm00001eb350790_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-14565 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26786 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.542, evm.TU.LG17.554 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g03540 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.778 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17663 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6431 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17116 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.18 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012294 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15867 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8981 |
| Salicaceae | Populus euphratica | 2 | populus_peu03332, populus_peu34178 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635489 |
| Solanaceae | Solanum chilense | 1 | SOLCI005067700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026619 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12825 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1656 |
| Zosteraceae | Zostera marina | 1 | Zosma02g05500.v3.1 |