halophFGD

Basic Information

Locus ID: Ag1G01051

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: LETM1 and EF-hand domain-containing protein 1

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	159913342	159922234	-	Ag1G01051

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.50	84,196.77 Da	54.39	86.15	-0.55

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00051	EFh	667	729	9.52368E-7	IPR002048
Pfam	PF07766	LETM1-like protein	196	462	1.8E-107	IPR011685
SUPERFAMILY	SSF47473	EF-hand	591	730	2.14E-9	IPR011992
Gene3D	G3DSA:1.10.238.10	-	555	741	6.3E-9	-
ProSiteProfiles	PS51758	Letm1 ribosome-binding (RBD) domain profile.	294	497	23.316528	IPR033122
ProSiteProfiles	PS50222	EF-hand calcium-binding domain profile.	699	734	8.655371	IPR002048
ProSiteProfiles	PS50222	EF-hand calcium-binding domain profile.	663	698	10.859108	IPR002048
MobiDBLite	mobidb-lite	consensus disorder prediction	112	132	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	114	132	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	611	639	-	-
Coils	Coil	Coil	510	546	-	-
Coils	Coil	Coil	647	667	-	-

Gene Ontology

Molecular Function:

GO:0005509 (calcium ion binding) GO:0043022 (ribosome binding)

KEGG Pathway

KO Term:

K17800 (LETM1 and EF-hand domain-containing protein 1, mitochondrial)

Pathway:

ko04139 (Mitophagy - yeast) map04139 (Mitophagy - yeast)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G65540.1	LETM1-like protein.
RefSeq	XP_017227733.1	PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial [Daucus carota subsp. sativus]
Swiss-Prot	Q5ZK33	Mitochondrial proton/calcium exchanger protein OS=Gallus gallus OX=9031 GN=LETM1 PE=2 SV=1
TrEMBL	A0A175YBD7	Mitochondrial proton/calcium exchanger protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_031599 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	13.174516	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	10.650509	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	14.709256	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	14.44082	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	13.980186	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	13.764861	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	12.344761	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	7.555954	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	21.341837	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	22.701059	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	21.648762	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	22.018261	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	24.888668	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	22.535515	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	14.385309	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	18.350765	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	11.911082	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	25.516661	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	16.475033	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	36.418953	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	38.038986	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	14.566559	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	15.006928	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	15.406772	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	16.424583	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	25.627926	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	19.624046	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	18.102907	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	23.595476	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.586515		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	2.764436		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	2.303718		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	4.782677		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	5.735636		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	5.553975		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	3.825104		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.055977		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.651243		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	10.248095	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	13.873	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	10.478249	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	35.377392	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	17.395248	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	17.180677	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	14.519177	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	41.697926	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	17.31595	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	16.889959	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	19.328806	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	16.564465	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg14642, jg2701, jg5981
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10151, gene_15760
Amaranthaceae	Atriplex hortensis	2	Ah005145, Ah019667
Amaranthaceae	Beta vulgaris	2	BVRB_3g059020, BVRB_4g074600
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg17400, Sbi_jg38466, Sbi_jg62048, Sbi_jg6573
Amaranthaceae	Salicornia europaea	2	Seu_jg15352, Seu_jg662
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00006449
Amaranthaceae	Suaeda glauca	5	Sgl01882, Sgl07059, Sgl07060, Sgl24274, Sgl29449
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000009339, gene:ENSEOMG00000014569 ... gene:ENSEOMG00000028893, gene:ENSEOMG00000030747, gene:ENSEOMG00000043523, gene:ENSEOMG00000045867
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.2BG0009420, CQ.Regalona.r1.3AG0011300 ... CQ.Regalona.r1.3BG0011470, CQ.Regalona.r1.4AG0002870, CQ.Regalona.r1.4BG0003020, CQ.Regalona.r1.8BG0009630
Anacardiaceae	Pistacia vera	1	pistato.v30247880
Apiaceae	Apium graveolens	1	Ag1G01051
Arecaceae	Cocos nucifera	2	COCNU_02G012360, contig69646984G000010
Arecaceae	Phoenix dactylifera	3	gene-LOC103706058, gene-LOC103708593, gene-LOC120112160
Asparagaceae	Asparagus officinalis	2	AsparagusV1_02.498.V1.1, AsparagusV1_09.515.V1.1
Asteraceae	Flaveria trinervia	3	Ftri11G30921, Ftri12G09869, Ftri6G23355
Brassicaceae	Arabidopsis thaliana	2	AT1G65540.1, AT3G59820.2
Brassicaceae	Eutrema salsugineum	2	Thhalv10005802m.g.v1.0, Thhalv10018184m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp5g03320.v2.2, Sp5g20450.v2.2
Brassicaceae	Brassica nigra	3	BniB03g043150.2N, BniB06g062920.2N, BniB08g074100.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq06G2272, Ceq07G0292
Casuarinaceae	Casuarina glauca	2	Cgl06G2384, Cgl07G0274
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno02g04910
Dunaliellaceae	Dunaliella salina	1	Dusal.0619s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g05840
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-4302
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG11.497, evm.TU.LG12.252
Plantaginaceae	Plantago ovata	2	Pov_00025091, Pov_00038865
Plumbaginaceae	Limonium bicolor	3	Lb1G02848, Lb3G17325, Lb3G19917
Poaceae	Echinochloa crus-galli	9	AH05.2218, AH07.2539, AH09.1436, BH05.2295, BH07.2348 ... BH09.1617, CH05.2422, CH07.2427, CH09.1799
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0136920, gene-QOZ80_2BG0192560 ... gene-QOZ80_4AG0312040, gene-QOZ80_4BG0343370, gene-QOZ80_5AG0371070, gene-QOZ80_5BG0418590
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0064010.1, HORVU.MOREX.r3.2HG0178460.1 ... HORVU.MOREX.r3.6HG0593260.1
Poaceae	Lolium multiflorum	3	gene-QYE76_013367, gene-QYE76_013436, gene-QYE76_044803
Poaceae	Oryza coarctata	4	Oco03G014920, Oco04G015410, Oco07G009650, Oco08G009450
Poaceae	Oryza sativa	2	LOC_Os02g39550.1, LOC_Os04g41950.1
Poaceae	Paspalum vaginatum	3	gene-BS78_04G191100, gene-BS78_06G147700 ... gene-BS78_09G163700
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0204545, Pt_Chr0302245, Pt_Chr0302283, Pt_Chr0505156 ... Pt_Chr0505413, Pt_Chr0600184
Poaceae	Sporobolus alterniflorus	6	Chr09G012040, Chr13G007940, Chr23G009700, Chr25G013420 ... Chr26G010050, Chr30G009770
Poaceae	Thinopyrum elongatum	4	Tel1E01G410700, Tel2E01G612000, Tel3E01G636000 ... Tel6E01G423100
Poaceae	Triticum dicoccoides	7	gene_TRIDC1AG037320, gene_TRIDC1BG042300 ... gene_TRIDC2AG051100, gene_TRIDC2BG054320, gene_TRIDC2BG085110, gene_TRIDC6AG033770, gene_TRIDC6BG040170
Poaceae	Triticum aestivum	13	TraesCS1A02G248400.1, TraesCS1B02G259000.1 ... TraesCS1D02G247800.1, TraesCS2A02G353000.1, TraesCS2B02G370900.1, TraesCS2D02G351100.1, TraesCS3A02G400500.1, TraesCS3B02G433500.1, TraesCS3D02G394900.2, TraesCS6A02G218100.1, TraesCS6B02G247500.1, TraesCS6D02G200200.1, TraesCS6D02G201300.2
Poaceae	Zea mays	3	Zm00001eb078520_P001, Zm00001eb246700_P001 ... Zm00001eb348080_P001
Poaceae	Zoysia japonica	3	nbis-gene-14094, nbis-gene-18583, nbis-gene-5161
Poaceae	Zoysia macrostachya	3	Zma_g16639, Zma_g21542, Zma_g27090
Portulacaceae	Portulaca oleracea	6	evm.TU.LG04.818, evm.TU.LG05.2116, evm.TU.LG08.1380 ... evm.TU.LG18.1630, evm.TU.LG20.249, evm.TU.LG22.278
Posidoniaceae	Posidonia oceanica	1	gene.Posoc02g25210
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_11_RagTag.1518, evm.TU.Scaffold_4_RagTag.6 ... evm.TU.Scaffold_6_RagTag.1166
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-12809, nbisL1-mrna-15491
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-13241, nbisL1-mrna-20491
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-1004, nbisL1-mrna-22520
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000010l.462, evm.TU.utg000011l.746
Rhizophoraceae	Kandelia obovata	3	Maker00000356, Maker00007772, Maker00008821
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-1175, nbisL1-mrna-13556, nbisL1-mrna-17618
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-20461, nbisL1-mrna-24248, nbisL1-mrna-4087
Salicaceae	Populus euphratica	3	populus_peu06642, populus_peu20532, populus_peu22478
Solanaceae	Lycium barbarum	2	gene-LOC132604322, gene-LOC132613474
Solanaceae	Solanum chilense	2	SOLCI001767200, SOLCI007296000
Solanaceae	Solanum pennellii	2	gene-LOC107004853, gene-LOC107005877
Tamaricaceae	Reaumuria soongarica	2	gene_4735, gene_9775
Tamaricaceae	Tamarix chinensis	2	TC02G1594, TC02G2984
Zosteraceae	Zostera marina	2	Zosma03g36760.v3.1, Zosma06g28050.v3.1