Basic Information
Locus ID:
Ag1G01048
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 159731844 | 159734568 | + | Ag1G01048 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.24 | 24,636.75 Da | 22.63 | 128.00 | 0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G21070.1 | 0 | |
| RefSeq | XP_017227662.1 | PREDICTED: uncharacterized protein LOC108192614 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166GXS6 | DsbD_2 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002131 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 30.07497 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 20.760096 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 18.359837 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 18.583485 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 21.124914 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 13.845575 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 11.444255 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.878155 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 55.721035 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 55.483425 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 56.873543 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 50.520004 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 46.290112 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 43.189552 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 96.710793 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 76.716583 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 95.955009 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 40.758774 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 39.997131 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 34.106144 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 32.688351 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 71.891304 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 71.049576 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 61.300018 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 67.328217 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 44.170185 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 42.486336 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 38.001617 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 45.625866 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 13.02181 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 13.172398 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 13.168678 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 21.337736 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 33.899731 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 20.562231 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 25.039345 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 15.187012 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 15.428267 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 35.054604 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 14.544411 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.989437 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 8.998834 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 28.738768 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 44.956135 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 57.507736 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 11.709457 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 65.479958 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 70.712364 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 73.791908 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 78.928307 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg16393, jg37657 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6889 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027809 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g171810, BVRB_8g187140 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1522, Sbi_jg35024 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3223 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003400 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72658, Sgl76196 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006545, gene:ENSEOMG00000039726 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0004760, CQ.Regalona.r1.9BG0001020 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30054670 |
| Apiaceae | Apium graveolens | 2 | Ag1G01048, Ag9G01505 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G015920, COCNU_12G005390 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103704987, gene-LOC103709053, gene-LOC103719243 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G26707 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G21070.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014597m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g23450.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g041800.2N, BniB05g042560.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1475 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1474 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g05900 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g09120, gene.Thate02g10310 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.32 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015748 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G19235 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0003680, gene-QOZ80_1BG0052090 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0257500.1 |
| Poaceae | Oryza coarctata | 2 | Oco01G007920, Oco02G008210 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g17020.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G120200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0603824 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G027190, Chr03G001070, Chr05G004890, Chr08G004080 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G325200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG026420, gene_TRIDC3BG030120 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G189800.1, TraesCS3B02G218900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb128960_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-24467, nbis-gene-32550 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g7323, Zma_g9654 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.1070, evm.TU.LG24.1073 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc07g11050, gene.Posoc10g08220 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.471, evm.TU.Scaffold_13_RagTag.594 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24278, nbisL1-mrna-30473 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12914, nbisL1-mrna-16496 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-15979, nbisL1-mrna-19729 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.324, evm.TU.utg000027l.281 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015952, Maker00018157 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-4243, nbisL1-mrna-5704 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11951, nbisL1-mrna-15198 |
| Salicaceae | Populus euphratica | 2 | populus_peu08495, populus_peu36850 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600715, gene-LOC132626302 |
| Solanaceae | Solanum chilense | 2 | SOLCI004209400, SOLCI007463800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002885, gene-LOC107010293 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3642 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1232 |
| Zosteraceae | Zostera marina | 1 | Zosma02g03280.v3.1 |