Basic Information
Locus ID:
Ag1G01044
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 159573240 | 159574973 | + | Ag1G01044 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 49,671.12 Da | 36.96 | 92.59 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 82 | 127 | 2.4E-6 | IPR001810 |
| Pfam | PF00400 | WD domain, G-beta repeat | 173 | 205 | 0.1 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 270 | 298 | 7.6E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 172 | 427 | 2.24E-41 | IPR036322 |
| SUPERFAMILY | SSF81383 | F-box domain | 79 | 157 | 9.42E-14 | IPR036047 |
| Gene3D | G3DSA:2.130.10.10 | - | 162 | 320 | 1.1E-23 | IPR015943 |
| Gene3D | G3DSA:1.20.1280.50 | - | 77 | 161 | 2.3E-10 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 321 | 442 | 1.3E-17 | IPR015943 |
| SMART | SM00320 | WD40_4 | 207 | 245 | 250.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 166 | 205 | 0.016 | IPR001680 |
| SMART | SM00256 | fbox_2 | 86 | 126 | 7.8E-7 | IPR001810 |
| SMART | SM00320 | WD40_4 | 339 | 379 | 0.0051 | IPR001680 |
| SMART | SM00320 | WD40_4 | 387 | 424 | 0.043 | IPR001680 |
| SMART | SM00320 | WD40_4 | 261 | 298 | 1.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 301 | 336 | 1.1 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 173 | 214 | 12.346452 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 268 | 307 | 9.806668 | IPR001680 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 80 | 126 | 10.424773 | IPR001810 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 173 | 209 | 9.941962 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 192 | 206 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G21040.1 | F-box protein 2. Encodes an F-box containing protein that interacts physically with BHLH32 and appears to be involved in mediating phosphate starvation responses. | 0 |
| RefSeq | XP_017230527.1 | PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Daucus carota subsp. sativus] | 0 |
| Q94AD8 | F-box/WD-40 repeat-containing protein At5g21040 OS=Arabidopsis thaliana OX=3702 GN=At5g21040 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166GXP9 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002128 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 10.240017 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.914163 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.938492 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 15.154408 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.815082 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 14.596413 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 12.456115 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 16.291437 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 20.643692 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 21.769026 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 22.500313 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 30.07786 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 22.12266 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 18.355074 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 7.475715 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 5.833143 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 8.130726 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.596569 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.391768 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.229719 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 7.279059 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 9.76206 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.265522 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 6.688609 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.799095 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 8.618403 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 7.296775 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 9.895628 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 9.538595 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 7.609438 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.243329 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.838849 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 17.912184 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 14.799321 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 12.610667 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 14.817878 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 10.292565 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 12.540421 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 14.058139 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.533117 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.264043 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 26.038897 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 20.694542 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 42.706566 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 34.939438 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 19.283705 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 31.487501 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 12.596666 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 22.605347 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 20.429516 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg16387, jg35637, jg37661, jg37662 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5763 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g171730 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1512, Sbi_jg35042 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3235 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003410 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72669, Sgl76207 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008006, gene:ENSEOMG00000037346 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0004830, CQ.Regalona.r1.9BG0000940 |
| Apiaceae | Apium graveolens | 2 | Ag1G01044, Ag9G01509 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G018070 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713828 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.29.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G29475 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G21040.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016076m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g23500.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g041850.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1496 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1483 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g13770 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0204s00012.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g05550 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2379 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.25 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00013800, Pov_00015757 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G20230 |
| Poaceae | Echinochloa crus-galli | 2 | AH09.2322, BH09.2519 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0303630, gene-QOZ80_4BG0334540 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0195200.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_071908 |
| Poaceae | Oryza coarctata | 1 | Oco07G016180 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g52870.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G232000 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G004580, Chr25G002940, Chr26G015810, Chr30G002890 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G783500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG065800, gene_TRIDC2BG070850 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G463100.1.cds1, TraesCS2B02G484800.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb431140_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-22891 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20467 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1794, evm.TU.LG14.83 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g29100 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.475, evm.TU.Scaffold_13_RagTag.585 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24270, nbisL1-mrna-30485 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12910 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15969 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000015l.126, add.evm.TU.utg000027l.127 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017827 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18418 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15207 |
| Salicaceae | Populus euphratica | 1 | populus_peu36843 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600737, gene-LOC132603521 |
| Solanaceae | Solanum chilense | 2 | SOLCI002704600, SOLCI007372400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005029, gene-LOC107021055 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6432 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1164 |
| Zosteraceae | Zostera marina | 1 | Zosma01g42530.v3.1 |