halophFGD

Basic Information

Locus ID: Ag1G01041

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Translation initiation factor eIF-2B subunit

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	159481059	159486607	+	Ag1G01041

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.16	49,688.38 Da	40.31	96.59	-0.06

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd04198	eIF-2B_gamma_N	3	219	1.42625E-63	-
CDD	cd04652	LbH_eIF2B_gamma_C	369	449	3.53366E-33	-
Pfam	PF00132	Bacterial transferase hexapeptide (six repeats)	386	421	2.0E-4	IPR001451
Pfam	PF00483	Nucleotidyl transferase	6	146	1.2E-13	IPR005835
SUPERFAMILY	SSF53448	Nucleotide-diphospho-sugar transferases	4	424	8.44E-36	IPR029044
Gene3D	G3DSA:2.160.10.10	Hexapeptide repeat proteins	347	457	1.4E-17	-
Gene3D	G3DSA:3.90.550.10	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	1	345	2.1E-36	IPR029044

Gene Ontology

Biological Process:

GO:0009058 (biosynthetic process)

Molecular Function:

GO:0016779 (nucleotidyltransferase activity)

KEGG Pathway

KO Term:

K03241 (translation initiation factor eIF-2B subunit gamma)

Pathway:

ko03013 (Nucleocytoplasmic transport) map03013 (Nucleocytoplasmic transport)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G19485.1	transferases;nucleotidyltransferases.
RefSeq	XP_017227663.1	PREDICTED: translation initiation factor eIF-2B subunit gamma [Daucus carota subsp. sativus]
Swiss-Prot	Q54FQ8	Translation initiation factor eIF2B subunit gamma OS=Dictyostelium discoideum OX=44689 GN=eif2b3 PE=3 SV=1
TrEMBL	A0A175YDA5	NTP_transferase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_031608 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	35.605728	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	24.401239	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	21.012327	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	24.262682	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	25.049122	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	25.079563	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	22.720314	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	22.071692	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	24.637205	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	23.521904	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	24.451994	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	25.538965	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	29.095802	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	22.52627	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	16.187227	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	18.953936	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	23.743166	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	16.94696	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	20.015467	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	15.399026	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	21.165823	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	26.058136	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	23.898685	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	31.404198	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	21.601048	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	28.270836	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	32.49128	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	18.011456	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	26.173183	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	8.366393		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	11.973167		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	8.195366		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	14.995643		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	16.169447		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	14.281844		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	9.057036		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	6.994733		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	7.724398		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	12.520145	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	7.086599	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	5.318705	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	20.494974	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	24.879108	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	34.404934	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	27.325489	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	26.117268	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	21.300928	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	25.932802	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	32.121178	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	29.037941	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg8487
Aizoaceae	Mesembryanthemum crystallinum	1	gene_10167
Amaranthaceae	Atriplex hortensis	1	Ah005110
Amaranthaceae	Beta vulgaris	1	BVRB_4g074130
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg17356, Sbi_jg61999
Amaranthaceae	Salicornia europaea	1	Seu_jg619
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00015510
Amaranthaceae	Suaeda glauca	2	Sgl24321, Sgl29494
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000011372, gene:ENSEOMG00000027834 ... gene:ENSEOMG00000043312
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.4AG0002570, CQ.Regalona.r1.4BG0002670
Anacardiaceae	Pistacia vera	1	pistato.v30208230
Apiaceae	Apium graveolens	1	Ag1G01041
Arecaceae	Cocos nucifera	1	COCNU_01G016740
Arecaceae	Phoenix dactylifera	1	gene-LOC103720591
Asparagaceae	Asparagus officinalis	1	AsparagusV1_Unassigned.334.V1.1
Asteraceae	Flaveria trinervia	1	Ftri17G18995
Brassicaceae	Arabidopsis thaliana	1	AT5G19485.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10013503m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp6g24920.v2.2
Brassicaceae	Brassica nigra	2	BniB02g043210.2N, BniB05g044250.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq05G1677
Casuarinaceae	Casuarina glauca	1	Cgl05G1671
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno03g02470
Dunaliellaceae	Dunaliella salina	1	Dusal.0181s00028.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate07g09650
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG09.70
Plantaginaceae	Plantago ovata	1	Pov_00026665
Plumbaginaceae	Limonium bicolor	1	Lb3G15872
Poaceae	Echinochloa crus-galli	3	AH06.1676, BH06.1593, CH06.1749
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_6AG0530950, gene-QOZ80_6BG0484770
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.7HG0711390.1
Poaceae	Lolium multiflorum	1	gene-QYE76_033875
Poaceae	Oryza coarctata	2	Oco11G009690, Oco12G009650
Poaceae	Oryza sativa	1	LOC_Os06g23160.1
Poaceae	Paspalum vaginatum	1	gene-BS78_10G145900
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0402793
Poaceae	Sporobolus alterniflorus	4	Chr11G009500, Chr14G011870, Chr21G011820, Chr30G014140
Poaceae	Thinopyrum elongatum	1	Tel7E01G584200
Poaceae	Triticum dicoccoides	2	gene_TRIDC7AG047490, gene_TRIDC7BG040120
Poaceae	Triticum aestivum	3	TraesCS7A02G331800.1, TraesCS7B02G243400.1 ... TraesCS7D02G339900.1
Poaceae	Zea mays	1	Zm00001eb051600_P003
Poaceae	Zoysia japonica	1	nbis-gene-47907
Poaceae	Zoysia macrostachya	1	Zma_g30122
Portulacaceae	Portulaca oleracea	2	evm.TU.LG08.1400, evm.TU.LG22.299
Posidoniaceae	Posidonia oceanica	1	gene.Posoc02g07140
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_12_RagTag.455
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-24295, nbisL1-mrna-30455
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-12927
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-19716
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000015l.339, evm.TU.utg000027l.291
Rhizophoraceae	Kandelia obovata	2	Maker00015502, Maker00017894
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-4260, nbisL1-mrna-5695
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-11937, nbisL1-mrna-15179
Salicaceae	Populus euphratica	2	populus_peu01817, populus_peu35999
Solanaceae	Lycium barbarum	1	gene-LOC132600750
Solanaceae	Solanum chilense	1	SOLCI004255000
Solanaceae	Solanum pennellii	1	gene-LOC107002874
Tamaricaceae	Reaumuria soongarica	2	STRG.27989_chr04_+, STRG.31481_chr11_+
Tamaricaceae	Tamarix chinensis	1	TC02G2955
Zosteraceae	Zostera marina	1	Zosma06g21750.v3.1